Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00339 ATGAACTTTACTAATTTCATCCTTATTTTATTCTGGTTTTTTCGGTTAATATCACCTGTCATTGCTGTAAAGAAGTCCTATATTGTGTTATTAGGATCTCACTCACATGGGTTAGAGGTATCAACAATAGATCTTCAAAGAGTGGTTGATTCCCATCACAAATTGCTCGGATCCTTCTTGGGGAGTTCTGAAAAGGCAAAAGATGCCATTTTTTACTCGTATAAGAACCATATAAATGGGTTTGCAGCCATTCTAGATGAGGAAGAGGCCACCAAGTTTGCAAAGCACCCAGAAGTAGCAGCAGTGTTGCCAAACAAAGCCAAAGAGTTGCACACAACTCATTCATGGGAGTTCATGCATTTGGAGAAGAATGGTTTTATTCTCCCTTTTTCTCCTTGGAGGAAGGCTAGATTTGGAAAAGATGTTATTATTGCCAATCTCGACACCGGTGTATGGCCCGAGTCCAAGAGTTTTGGAGAACAGGGCATAGTAGGAGGTGTGCCATCGAGATGGAAAGGAGGTTGCACGGATAAAACTCCTGATGCAGTGCCTTGTAACAGGAAATTAATCGGAGCAAAGTATTTCAATCAGGGGGTAATCGCGTACTTGAAATCCCAAAATTTAACAGATGAACTCCCATTGATCGTCAACTCCACGCGCGATTACGTAGGTCATGGATCCCACACGCTATCGACAGCCGGCGGAAACTATGTCTCTGGCGTCAGCGTATTTGGGTCCGGTATCGGAACTGCCAAGGGCGGCTCTCCCAAGGCCCGCGTCGCTGCCTATAAGGTATGCTGGCCGTTCCACAACAGTGGCGGTTGCTACGACGCCGACATTTTTGACGGAATTGATCAAGCCATCTACGACGGCGTCGATGTCCTTTCGCTTTCCATCGGCAGTCCACCAGCCGAATACTATGATGATACCATCGCCATTGCTTCCTTTCATGCACTGAAGAAAGGAATCCCTGTGGTGTGCTCTGCCGGCAACTCTGGCCCGAGCATGGCGACTGCTACTAATATTGCTCCGTGGATTTTGACGGTTGGGGCTAGCACTTTGGACCGGAGAAAGCTATACCCATTGATAACTGGAGCTCAGGCGAAAGCAACGACCGCCTCTGCCGACGACGCCATGCTCTGCAAGCCGAAAACTTTGGATCGTTCTAAAGTGAATGGGAAGATCTTGGTTTGCTTGACAGGGGGCTCTTCGAGAATTGACAAAGGAATGCAAGCCACATGCATGAGGTTCCCCAAATATAAAATATCAGTTCATTTGATAAATCATTTAAAAAGTTAA 1299 46.27 MNFTNFILILFWFFRLISPVIAVKKSYIVLLGSHSHGLEVSTIDLQRVVDSHHKLLGSFLGSSEKAKDAIFYSYKNHINGFAAILDEEEATKFAKHPEVAAVLPNKAKELHTTHSWEFMHLEKNGFILPFSPWRKARFGKDVIIANLDTGVWPESKSFGEQGIVGGVPSRWKGGCTDKTPDAVPCNRKLIGAKYFNQGVIAYLKSQNLTDELPLIVNSTRDYVGHGSHTLSTAGGNYVSGVSVFGSGIGTAKGGSPKARVAAYKVCWPFHNSGGCYDADIFDGIDQAIYDGVDVLSLSIGSPPAEYYDDTIAIASFHALKKGIPVVCSAGNSGPSMATATNIAPWILTVGASTLDRRKLYPLITGAQAKATTASADDAMLCKPKTLDRSKVNGKILVCLTGGSSRIDKGMQATCMRFPKYKISVHLINHLKS 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3920324 3930524 - CmaCh13G003390.1 Cma13g00339 306166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00339 432 Pfam Subtilase family 139 355 IPR000209 GO:0006508|GO:0008236
Cma13g00339 432 ProSiteProfiles Serine proteases, subtilase domain profile. 115 432 - -
Cma13g00339 432 PANTHER PEPTIDASE S8 16 357 - -
Cma13g00339 432 Pfam Peptidase inhibitor I9 26 110 IPR010259 -
Cma13g00339 432 SUPERFAMILY Subtilisin-like 110 368 IPR036852 GO:0004252|GO:0006508
Cma13g00339 432 Gene3D Peptidase S8/S53 domain 141 354 IPR036852 GO:0004252|GO:0006508
Cma13g00339 432 PANTHER BNAC02G33520D PROTEIN 16 357 - -
Cma13g00339 432 CDD Peptidases_S8_3 108 354 IPR034197 -
Cma13g00339 432 CDD PA_subtilisin_like 349 410 - -
Cma13g00339 432 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 111 IPR037045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00333 Cma-Chr13:3857810 Cma13g00339 Cma-Chr13:3920324 0 dispersed
Cma13g00334 Cma-Chr13:3872461 Cma13g00339 Cma-Chr13:3920324 0 dispersed
Cma13g00339 Cma-Chr13:3920324 Cma13g00330 Cma-Chr13:3831915 0 dispersed
Cma13g00335 Cma-Chr13:3874425 Cma13g00339 Cma-Chr13:3920324 4.55E-14 proximal
Cma13g00339 Cma-Chr13:3920324 Cma16g01002 Cma-Chr16:7712432 6.78E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00339 - - cmax:111471617 803.512