Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00394 ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTCTGTGGGATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTTGTTGGGCTCGAGAGGGTTCTTGCTAAGTTCAAAAGCCTATCGGAGATGGAGCAATGCAATAAGATGGTGAATCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGAGAGAAACGCGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCACCACGAGATCTCAATATCATTGATTTGTATGATCTTGTGTGGTTGGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACTGAACCGCAGGTCGTGTCGGCAGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGAAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGCCCCTTCAATTCCTAACCTGACCTCTGGCCCTCCGCCGTGGGGCTCCAGAGGGTTGTCTCCAAGTTCAAAAGCCTGTCGGAGATGGAGCAATGCAATAAGATGGTCAACCAAGAGGCATTCCTTCACGACCGCATCGCCAAAGCCGCCGAGCAACTCGAGAAGTAGTAGACGGAGAACCGTGAGAAGGAGATTTATAACTGTGAGATTACTCAAAGAAGACCTTGATGAATGCTTTTATTCAAGAAAATCAGTCAATTCACAGCTAGCAAAGGCAATGGAAGGGTGCCATATGCAAGCTGAACAGAGAAAATGA 930 46.56 MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQREKREKEITRLMFESLVAGATPPRDLNIIDLYDLVWLVDETMTDVCKRIELLTTTMTEPQVVSAVEPSWFMEMMSHEAYDDQMGFKIWDDVIQLPNDDNHAPSIPNLTSGPPPWGSRGLSPSSKACRRWSNAIRWSTKRHSFTTASPKPPSNSRSSRRRTVRRRFITVRLLKEDLDECFYSRKSVNSQLAKAMEGCHMQAEQRK 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4498887 4502691 - CmaCh13G003940.1 Cma13g00394 306221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00394 309 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cma13g00394 309 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Cma13g00394 309 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 174 - -
Cma13g00394 309 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cma13g00394 309 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma13g00394 309 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cma13g00394 309 Coils Coil 87 114 - -
Cma13g00394 309 MobiDBLite consensus disorder prediction 204 228 - -
Cma13g00394 309 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma13g00394 309 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma13g00394 309 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma13g00394 309 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cma13g00394 309 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Cma13g00394 309 MobiDBLite consensus disorder prediction 245 264 - -
Cma13g00394 309 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01184 Cma-Chr10:8702422 Cma13g00394 Cma-Chr13:4498887 3.14E-69 dispersed
Cma13g00394 Cma-Chr13:4498887 Cma02g00634 Cma-Chr2:3828522 6.86E-12 dispersed
Cma13g00394 Cma-Chr13:4498887 Cma18g01139 Cma-Chr18:9209632 9.25E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36083 PF00319 SRF-TF 2.30E-17 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00394 - - csv:101219796 293.123