Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00416 ATGGCTCTGTGGGTCTTCATCTTCATGATTTTCTTGTTGATCTTTGGTTTTATTCCAGTTTTTCCTGCTCTTACTGATGATTCTGATGTTCAAGCTTTGCAAGTTATATACACTTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGCTGGTGGTGGGGATCCATGTGCAGAGTCATGGAAGGGTGTGGCTTGTGAAGGGTCTGCTGTTGTTTCCATTGAGATTTCTGGTTTAGAGCTGAATGGAACGATGGGTTATGCGCTTTCGAGTCTTTTGTCATTGAAAGAACTTGATATAAGCGACAACCTTATTCATGACTCAATTCCTTACCAATTGCCGCCGAATCTCACGAGACTAAATATGGCGAAGAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAGTTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGGGACGTTTTCACCAATCTTGCTACCCTGGGGACGTTGGACCTTTCTTTCAACAACTTAACTGGAGATCTTCCTGAATCCTTGAGCTCTTTATCCAATGTTTCTTCCCTCTTTCTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTTGACGATAGTCCTGCACCTCCTCCCCCGCCTTTTACTCCACTGCCTCCTGGTAGATCTCGTAACAGCTCCAGACATCCCGGGTCTGGCGGTGGCACCCATACTGCCCCAAGTTCTGATACGAGCTCATCCCACTCGAACAAAGGCTTGTCAGTTTTGGTTATGGTGGGGATAATTTTGGGTGCTATAATTATTGCCCTCATTGTGTTAGTTGCTTTCGCTGTCTGCATCATGAAGAGAAAACGCAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCATTTGGCACCAATGTGAATGCTGAGGTGCAAGAGCGTCGGGGAAAAAGTGTTGTCGCTGTTGGAGATATTAAGCCTCTTCGTACCGAGAAAATAAATCCCGAGAGGTTACAGGCGACGAATGGATCAGTGAAAAGAATGAAGTCCCCTATCACTGCTACTTCTTACACCGTTGCTGCTCTTCAAAGTGCAACAAATAGTTTCAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTCGGTCGTGTTTACAAATCGGAGTTTCCAAATGGGAAGATAATGGCGATAAAGAAAATTGATAATGCAGCACTATCACTACAAGAGGAAGACAATTTTCTTGAAGCGGTTTCAAACATGTCACGATTGAGGCATACGAACATTGTGACACTAAATGGTTATTGTGCGGAATATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATGCTCCATTTTGCTGATGAAAGTAGCAAGACACTGACTTGGAATGCACGTGTGCGCGTAGCACTTGGAACCGCCCGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCCGTTGTACATAGAAACTTGAAAAGTGCAAACATTTTACTTGATGAAGAGCTCAACCCCCATTTGTCAGATTGTGGTTTAGCTGCTTTAACACCGAACACAGGGCGACAGATATCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCGGGTTTGTACACGGTCAAAAGTGATGTTTATAGCTTTGGGGTCGTGATGTTGGAGCTCTTGAGTGGCCGAAAGCCGCTTGATAGTTCCAGGTCGAGATCAGAGCAATCACTTGTGAGATGGGCTACTCCCCAACTTCACGACATCGACGCCTTGGCAAAAATGGTAGACCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCGCGCTTCGCCGACATTATTGCTCTATGTGTCCAGCCCGAGCCTGAATTCCGACCTCCAATGTCTGAAGTAGTACAAGCACTGGTACGCTTAGTGCAAAGAGCTAGTGTGGTTAAAAGGCATTCGAGTGACGAGTCGGGTTTCACTTACAAAACGCCCGAGCACAATGTAGTTGATTTGCCATTTTGA 2136 44.48 MALWVFIFMIFLLIFGFIPVFPALTDDSDVQALQVIYTSLNSPPQLTGWIAGGGDPCAESWKGVACEGSAVVSIEISGLELNGTMGYALSSLLSLKELDISDNLIHDSIPYQLPPNLTRLNMAKNSLSGNLPYSFSTMASLSYLNMSHNLLSQAIGDVFTNLATLGTLDLSFNNLTGDLPESLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDDSPAPPPPPFTPLPPGRSRNSSRHPGSGGGTHTAPSSDTSSSHSNKGLSVLVMVGIILGAIIIALIVLVAFAVCIMKRKRKNIGLRASSGRLSFGTNVNAEVQERRGKSVVAVGDIKPLRTEKINPERLQATNGSVKRMKSPITATSYTVAALQSATNSFSQECIVGEGSLGRVYKSEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEYGQRLLVYEFIGNGSLHDMLHFADESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKSANILLDEELNPHLSDCGLAALTPNTGRQISTQMVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLSGRKPLDSSRSRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPEHNVVDLPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4703820 4709946 - CmaCh13G004160.1 Cma13g00416 306243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00416 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00416 711 MobiDBLite consensus disorder prediction 259 286 - -
Cma13g00416 711 Pfam Protein kinase domain 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00416 711 MobiDBLite consensus disorder prediction 241 286 - -
Cma13g00416 711 Gene3D Ribonuclease Inhibitor 24 258 IPR032675 -
Cma13g00416 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cma13g00416 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 23 706 - -
Cma13g00416 711 SUPERFAMILY L domain-like 26 232 - -
Cma13g00416 711 SUPERFAMILY Protein kinase-like (PK-like) 381 677 IPR011009 -
Cma13g00416 711 CDD STKc_IRAK 409 680 - -
Cma13g00416 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
Cma13g00416 711 PANTHER OS01G0253100 PROTEIN 23 706 IPR045271 GO:0004714|GO:0006468
Cma13g00416 711 MobiDBLite consensus disorder prediction 244 258 - -
Cma13g00416 711 Gene3D Transferase(Phosphotransferase) domain 1 481 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00416 Cma-Chr13:4703820 Cma14g01226 Cma-Chr14:9734658 0 dispersed
Cma13g00416 Cma-Chr13:4703820 Cma18g00568 Cma-Chr18:3822270 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68997 PF00069 Pkinase 1.10E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00416 - - csv:101216091 1174.46