Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00431 ATGGCAGCAAAAGATGCAGAGAAAGTTTTGGACGTGCAGTCGGTCGTTGAAGCAGTAGTTGCAGACGAAGACGCCGATGTTCCTCGCTACGAAGTAGAAAGCCTTTGCATGCGCTGTCACGAAAACGGAACAACAAGATTTTTGTTAACTTTAATTCCGAACTTCAGAAAGATCTTATTGTCGGCCTTTGAGTGTCCACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCATCCACGAGGCTGTTGCTACTCTTTGGAGGTTCATGCTGGCGACCAGAAGACGCTCAATCGACAAGTGGTGAAATCTGAATCTGCCATTATTAAGATCCCTGAATTGGATTTCGAGATTCCAGCCGAGGCTCAACGTGGAACTCTGTCAACCGTGGAAGGTATATTGGTACGAGCCATAGATGGATTGGAATCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTGAAACTGAAAGCTTGTGCCATAGGAGATTCATCTTTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCATCCAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGAGTCCAGAACAACAAGCATCATTGGGTTATTACGTTGAATCATCACAATCTGAAGAAGCTGAGGGTGGAGTATCAACAAGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAGCCGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCTTGTGCAGTTAGGTGTGAGACTCGAATGTTTGTAACTAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTAAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTAAAGAATGTTAGAGATCTCAGTCGAGATTTGATAAAGTCAGATACTGCAAGTGTGAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACCACTGTTGAAGGTTTAATCACAAAGATAAGTGAAAGTCTAGAGAGAGTGCATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAGAAGAAACAAGTGGCTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCGTGGACTCTAATCCTTGATGATGCATTAGCAAACTCGTTTATTGCACCAGTGACTGATGATATCAAAGATGACCATCAGTTAACATATGAGGAATACGAACGGTCCTGGGATCAGAATGAGGAACTCGGTTTGAACGACATGGACACCTCATCTGCTGATGCTGCTTACATGTAA 1473 44.06 MAAKDAEKVLDVQSVVEAVVADEDADVPRYEVESLCMRCHENGTTRFLLTLIPNFRKILLSAFECPHCGERNNEVQFAGEIHPRGCCYSLEVHAGDQKTLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAIDGLESLQEERRKVDPQTAEAIDQFLLKLKACAIGDSSFSFILDDPAGNSFIENPFAPSKDPSLSIKFYERSPEQQASLGYYVESSQSEEAEGGVSTSGVDASNQVRGEAHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVRCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKNVRDLSRDLIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENRRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDIKDDHQLTYEEYERSWDQNEELGLNDMDTSSADAAYM 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4856316 4872556 - CmaCh13G004310.1 Cma13g00431 306258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00431 490 Gene3D ZPR1, zinc finger domain 27 79 IPR042452 -
Cma13g00431 490 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Cma13g00431 490 SMART zpr1 289 449 IPR004457 GO:0008270
Cma13g00431 490 SMART zpr1 34 194 IPR004457 GO:0008270
Cma13g00431 490 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 489 - -
Cma13g00431 490 PANTHER ZINC FINGER PROTEIN ZPR1 3 489 IPR040141 -
Cma13g00431 490 Pfam ZPR1 zinc-finger domain 289 447 IPR004457 GO:0008270
Cma13g00431 490 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Cma13g00431 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270
Cma13g00431 490 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270
Cma13g00431 490 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Cma13g00431 490 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00431 K06874 - csv:101208000 888.641