Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00436 ATGGCATCCTCCACTTCACTTCTCAAGCTCATCTTAATCTTCCTCTTTCTCATCTCTTTTCTCACAACCCAAGTTGTTTCACAAACTAATCAATGTGAAACAACAACCAATTCTTGCACCAATAAAGACAAAGCAACACGTCTTAAAATCATTGCCATTTTCTCGATACTTATTGCGAGCGTCATCGGCGTTTGCTCTCCGCTCTTCTCTCAATCCATCCCGATGTTGCACCCGGATAGAAACACGTTCATCATCCTTAAAGCCTTTGCATCTGGCATTATTCTCGCCACCGGTTTTATGCATGTTTTGCCTGATTCTTTTGACATGCTTTGGTCTAATTGTCTCAAGGAAAACCCATGGCATAAGTTTCCCTTTTCGGGTTTTCTTGCCATGATGTCTGCCATTTTCACTCTCATGGTTGATTCTGTGGCTACTAGTTTGTATACCAAGAAACATAACGAAGTTATGCCTGAAAGTCGAGAAGACGGTCATCATGAGTTGCCTGTGGTCAGCGGTGGCCATTTTCATGGCCACCATCACAGAGACATCAAAGAACTCAATGTTGGTTCTCAACTACTACGTTATCGAGTTATTGCCATGGTTTTGGAATTGGGAATTGTTGTCCATTCCGTTGTGATAGGACTTTCACTTGGAGCAACAAATGATACTTGCACAATCAAAGGCCTAGTGGCTGCTCTTTGCTTCCATCAAATGTTTGAAGGGATGGGTCTTGGAGGCTGTATTCTTCAGGCAGAATACAAGTGGATGAAGAAGGCAATAATGGCATTCTTTTTCTCAGTGACAACGCCATTTGGGATAGCTCTTGGAATAGGGTTGTCCAAGACATACAAAGAAAACAGCCCAGCTGCGCTCATCACTGTCGGGTTGCTGAATGCTTCTTCAGCTGGCTTGCTCATCTACATGGCTTTGGTGGATCTTCTTTCGGCTGACTTTATGGGACCAAAGCTGCAAGGCAGCATCAAACTCCAAGTCAAATCCTATGTTGCTGTGCTCTTGGGAGCTGGTGGCATGTCCTTAATGGCTAAGTGGGCTTGA 1056 44.03 MASSTSLLKLILIFLFLISFLTTQVVSQTNQCETTTNSCTNKDKATRLKIIAIFSILIASVIGVCSPLFSQSIPMLHPDRNTFIILKAFASGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPFSGFLAMMSAIFTLMVDSVATSLYTKKHNEVMPESREDGHHELPVVSGGHFHGHHHRDIKELNVGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMAFFFSVTTPFGIALGIGLSKTYKENSPAALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYVAVLLGAGGMSLMAKWA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4933094 4935925 + CmaCh13G004360.1 Cma13g00436 306263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00436 351 Pfam ZIP Zinc transporter 48 348 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma13g00436 351 TIGRFAM zip: ZIP zinc/iron transport family 35 351 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cma13g00436 351 PANTHER ZINC/IRON TRANSPORTER 14 351 - -
Cma13g00436 351 PANTHER ZINC TRANSPORTER 10-RELATED 14 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01278 Cma-Chr3:8336845 Cma13g00436 Cma-Chr13:4933094 3.10E-136 dispersed
Cma13g00436 Cma-Chr13:4933094 Cma19g01119 Cma-Chr19:9194576 1.69E-52 dispersed
Cma13g00436 Cma-Chr13:4933094 Cma18g00546 Cma-Chr18:3514491 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00436 K14709 - csv:101221552 592.038