Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00447 ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGAGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCGGCCGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAATGCTAGGGTGCGTGACCCGGTCTATGGGTGTGTCGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGACTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA 522 54.98 MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4990036 4991905 - CmaCh13G004470.1 Cma13g00447 306274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00447 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 163 - -
Cma13g00447 173 Coils Coil 96 123 - -
Cma13g00447 173 MobiDBLite consensus disorder prediction 131 154 - -
Cma13g00447 173 MobiDBLite consensus disorder prediction 131 153 - -
Cma13g00447 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 163 - -
Cma13g00447 173 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cma13g00447 173 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00024 Cma-Chr2:124732 Cma13g00447 Cma-Chr13:4990036 1.04E-66 dispersed
Cma02g00725 Cma-Chr2:4403586 Cma13g00447 Cma-Chr13:4990036 1.32E-51 dispersed
Cma04g01102 Cma-Chr4:5668634 Cma13g00447 Cma-Chr13:4990036 9.50E-54 dispersed
Cma13g00447 Cma-Chr13:4990036 Cma19g01089 Cma-Chr19:9065665 9.35E-53 dispersed
Cma13g00447 Cma-Chr13:4990036 Cma04g00134 Cma-Chr4:631586 3.66E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36087 PF03195 LOB 2.00E-43 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00447 - - csv:101202930 300.056