Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00489 ATGTCTCTCCTCAGACCTTACGGTAAGGTCGATGAATCCGATCAAATGAGGCTCGACGCTAGCCGGAGAACTCGGAAGAGGGTTATTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGCTGTTGTGTTCGGGACTAGAAATAGTTCCAAGAACGACGAGAGTGACAATCACAATGAGGCTCTTTCAACTTCGATAAAAGCAGTTTGTGATGAGACTTTGTATCCCGATACTTGTAACAATGCTTTTGGTCCTTTAGCTAACTCGAGCCACCTCGACCCTGGTCAAATAGCCAAGTTTTCGGTTCAACTCGCGCTTAGTGAACTGTCGCGAGTGGCTGATTACCTTTTGGAGCATGCCATTACCAATTCAACTGATAATAAGACCATATTAGCTTTGAGAGGTTGTCATGAACTTTTGGACTTGGCAATGGATCATCTAAATGATTCATTATCATCAAGTGAGATTACAATGCTGAAAGCTGTGGATGATTTGAAAACATGGCTAAGTTCAGCAGCTACTTATCAGCAAACTTGCATCGACGGGCTCGAGGAAGTCGATCTCGCTTTGATGAATGTCATTGCAAATTACTTGAAGAACTCTACTGAAATGACCAGCAATGGCCTTGCCATTGTGTCCTTCTTTTCGAAGCTAACGGATTCTTTCAGTCTACGACGATTGATGAGTTATGAAGATCGACATAGCAATGGAGATTGGGCGCGCCCGATACTCCGGAAGCTAGCTCAAAAGGATCTCCGTAAGCAGGCCGACATCGTCGTAGCGAAAGACAAATCGGGGAAGTACAAAACAATCACTGAAGCTCTCAAGGCTGTTCGTGATAAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAAGGAGTTTACAAGGAGAATGTTGAAGTTGTGAAGAACAAATGGAATGTAGTGATGATTGGCGATGGAATGACTTCAACCACTGTAACTGGCAAGCTCAACTTCATAGATGGGACGCCAACATTTTCTACTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTTGAGAACACGGCTGGGCCAAGCAAACACCAAGCGGTTGCTCTGATGTCGACGTCGGACCAATCGATCTTCTACCGCTGCCAAATGAATGCATACCAAGACACTCTCTATGCACACTCGAACCGTCAATTCTACCGTGACTGCAAGGTTTATGGCACGGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCAAAATTGCACCAAAGTTACCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCCGGTTTGATCCTAATCAACACACTGGCATTTCAATACAACACTCTTCAATCCAACCGTTCGAAAACTTAAAAACTACCCAAACTTACCTCGGTCGTCCATGGAAGAACTACTCGACGACCGTGTTTATGCAGAACAATTTCGGTAGCTTGATTCACCCAACTGGGTGGCTGCCATGGGTTGGAACATCAGCACCAGACACCATTTTCTATGCTGAGTTTCAAAACAAAGGCCCTGGTTCTTCCACAGCCAACAGAGTCAAATGGAAAGGTTTGAAGAATATTGACACCAAAACTGCCAAGAAATTCACTGTTTCCTCTTTCATTGATGGTAAAGATTGGATCTCAAAGGCTCAAGTTCCCTTCAATGCCACCCTTTGA 1701 44.15 MSLLRPYGKVDESDQMRLDASRRTRKRVIVIVLSSVVLVGVVVAVVFGTRNSSKNDESDNHNEALSTSIKAVCDETLYPDTCNNAFGPLANSSHLDPGQIAKFSVQLALSELSRVADYLLEHAITNSTDNKTILALRGCHELLDLAMDHLNDSLSSSEITMLKAVDDLKTWLSSAATYQQTCIDGLEEVDLALMNVIANYLKNSTEMTSNGLAIVSFFSKLTDSFSLRRLMSYEDRHSNGDWARPILRKLAQKDLRKQADIVVAKDKSGKYKTITEALKAVRDKSKKRTVIYVKKGVYKENVEVVKNKWNVVMIGDGMTSTTVTGKLNFIDGTPTFSTATFAAKGKGFIAIDMGFENTAGPSKHQAVALMSTSDQSIFYRCQMNAYQDTLYAHSNRQFYRDCKVYGTVDFIFGNSAVVLQNCKIAPKLPLLGQKNTITAQGRFDPNQHTGISIQHSSIQPFENLKTTQTYLGRPWKNYSTTVFMQNNFGSLIHPTGWLPWVGTSAPDTIFYAEFQNKGPGSSTANRVKWKGLKNIDTKTAKKFTVSSFIDGKDWISKAQVPFNATL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5244755 5247439 - CmaCh13G004890.1 Cma13g00489 306316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00489 566 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cma13g00489 566 Gene3D - 255 566 IPR012334 -
Cma13g00489 566 SUPERFAMILY Pectin lyase-like 258 564 IPR011050 -
Cma13g00489 566 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
Cma13g00489 566 PANTHER PECTINESTERASE 19 562 - -
Cma13g00489 566 CDD PMEI-like_3 71 220 - -
Cma13g00489 566 Pfam Plant invertase/pectin methylesterase inhibitor 68 214 IPR006501 GO:0004857
Cma13g00489 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 218 IPR035513 -
Cma13g00489 566 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Cma13g00489 566 SMART PMEI_2 64 214 IPR006501 GO:0004857
Cma13g00489 566 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 562 - -
Cma13g00489 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 219 IPR035513 -
Cma13g00489 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 215 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00489 Cma-Chr13:5244755 Cma08g01239 Cma-Chr8:7592616 8.88E-151 dispersed
Cma13g00489 Cma-Chr13:5244755 Cma14g01220 Cma-Chr14:9709640 3.83E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00489 - - csv:101210577 931.784