Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00493 ATGAGTAATTTATCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGAAAGATAATCAAGTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACACATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGATCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGCGAATTGTATCCAATAACTCCTCAAAGGAACCTGGGGAGTCAAGTTATTTTGAAGAGATTGTTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATATGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACAGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGTTGTCGGTTCCTCAGGAATACGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATAATTTCAGCAAATGACTTAATGGGGGAAGTAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTAAAATGTTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGATGACAATGCCCTGATCGACGACAGTGCTGTCGTCATCGTCGACGGGATGGTGAAACAAGAGATGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAATTGTACTTAGAACTCGAGTGGATGCCTCTTGATCAGTAG 1002 40.92 MSNLSADFRRHESAKSRLKDLLLQKDNQVCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEDRSKFIRSKYELQEFLKPSLRIVSNNSSKEPGESSYFEEIVDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDIISANDLMGEVEIDLQPMITSAMAFGDAKMFENMQIGKWLKSDDNALIDDSAVVIVDGMVKQEMSLKLQNVESGELYLELEWMPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5283276 5286244 - CmaCh13G004930.1 Cma13g00493 306320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00493 333 Pfam C2 domain 177 267 IPR000008 -
Cma13g00493 333 ProSiteProfiles C2 domain profile. 160 274 IPR000008 -
Cma13g00493 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 333 IPR044518 GO:0005096|GO:0005543
Cma13g00493 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cma13g00493 333 Gene3D C2 domain 175 333 IPR035892 -
Cma13g00493 333 SMART C2_3c 178 273 IPR000008 -
Cma13g00493 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Cma13g00493 333 Gene3D Arf GTPase activating protein 2 136 IPR038508 -
Cma13g00493 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cma13g00493 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cma13g00493 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cma13g00493 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cma13g00493 333 CDD ArfGap 18 124 - -
Cma13g00493 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 333 - -
Cma13g00493 333 CDD C2_ArfGAP 177 320 - -
Cma13g00493 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 144 IPR001164 GO:0005096
Cma13g00493 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01448 Cma13g00493 CCT
Cma07g00060 Cma13g00493 CCT
Cma13g00493 Cma18g00511 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00493 Cma-Chr13:5283276 Cma15g00820 Cma-Chr15:4119375 2.26E-115 dispersed
Cma13g00493 Cma-Chr13:5283276 Cma18g00511 Cma-Chr18:3056927 0 wgd
Cma13g00493 Cma-Chr13:5283276 Cma03g01448 Cma-Chr3:9065506 1.99E-163 wgd
Cma13g00493 Cma-Chr13:5283276 Cma07g00060 Cma-Chr7:331093 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00493 K12486 - csv:101211569 584.719