Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00495 ATGGCTCTTGCTATGCATAGAGATTCCTTGAATAAGCAAATGGATACCAGCAAGTATGTGAGATATACACCTGAGCAAGTCGATGCATTAGAGAGGGTATATGCTGAATGCCCAAAGCCTAGTTCGTTGAGGAGGCAACAACTCATTCGTGAGTGTCCCATTCTCTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCGTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCGATGAACAAGCTGTTGATGGAAGAGAACGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTACAAGAACGGATACATGAGACAGCAACTGCGCACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACCGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCTCGAAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCAACGAAGGTGGCCGAAATTCTCAAAGATCGTTTGTCGTGGTTTCGTGACTGCCGTTGTGTTGATGTATTAAGTGTAATCTCCACCGGAAATGGGGGAACCATAGAACTCTTGTATACACAGACATATGCACCGACAACCTTAGCAGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGAAGCCTTGTGATATGTGAGAGATCGTTAACGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTGAGAGCTGAAATGCTTCCGAGCGGATATCTTATTCGAGCTTGTGAGGACGGTTCCCTTATTCACATTGTGGATCATGTTGATTTAGATGCTTGGAGCGTTCCTGAAGTTCTTAGGCCACTTTATGAGTCGACAAAGATTCTAGCTCAGAGAAGGACTGTTGCTGCTTTACGCTACGTTCGGCAAATTGCTCATGAGGCGAGTGGAGAAATTCAATTGGGTGGCGGGCGCCAACCAGCTGTTTTAAGGACTTTCAGTCAAAGGCTCTCTAGGGGTTTTAATGATGCTGTAAATGGCTTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTCGAGGATGTGACGGTTGTTGTTAATTCATCTCCAAACAAATTCATCGGTTCGCAATATAACCAATCATTATATCCTACTTTTGGAGGTGTATTGTGTGCGAAGGCGTCGATGTTGTTGCAGAATGTGCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGAGTCGATGCATACTCGGCTGCGTGTCTTAAATCCAGTGCATATGCTGTTCCATGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCACATACCGTTGAAAACGAAGAGTTCTTGGAGGTCGTTCGGTTAGAGGGTCATGCTATGTTCCCTGAAGAAGCTGCGTTAGGTGGACGGGATATGTATTTATTGCAGCTGTGTAGCGGGGTTGATGAAAGTACAGTCGGTTCCTGCGCTCAGCTTGTATTTGCACCTATCGACGAATCATTTGCCGACGATGCTCCCTTACTACCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAGCAGATGCGTCGGCAGCTACTCGAACTTTGGATTTGGCTTCTACTCTAGAAGTCCGTCCTGGATCTGCCCGCCCAGGCGGTGAAACCGATGCTACAAACTACAACCTCAGGTCTGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCAAGACAATATGTGCGAACGGTTGTGGCATCAGTTCAGAGGGTTGCCATGGCTATTGCCCCCTCGCAACTTAGCTCCCATATTGGTCCAAAAAGCCTTCCTAGCTCCCCAGAGGCTCTCACGTTGTCCCAATGGATCGTGCGAAGCTACAGGATCCACACAGGGGCAGAGCTCTTTCAGGTTGAATCCCAGTCTCATGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCGTCTCCTGTGTTCACATTTGCGAACCAAGCCGGGCTTGACATGCTTGAAACTACGCTCGTCGCTCTTCAAGATATAACGCTTGACAAGATCCTTGAGGATGCCGGTAGGAAGATACTGTGCTCAGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCATATCGAGTATGGGCAGGCCGGTGTCGTATGAACAGGCGATTGCCTGGAAAGTTCTGAATGATGATGATGTCCATCACTGTTTGGCTTTCATGTTTGTTAACTGGTCATTTATGTGA 2535 47.65 MALAMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYKNGYMRQQLRTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYTQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEDGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRRTVAALRYVRQIAHEASGEIQLGGGRQPAVLRTFSQRLSRGFNDAVNGFVDDGWSLMDSDGVEDVTVVVNSSPNKFIGSQYNQSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKSSAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDESTVGSCAQLVFAPIDESFADDAPLLPSGFRVIPLESKADASAATRTLDLASTLEVRPGSARPGGETDATNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVASVQRVAMAIAPSQLSSHIGPKSLPSSPEALTLSQWIVRSYRIHTGAELFQVESQSHDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDITLDKILEDAGRKILCSEFSKIMQQGFAYLPAGICISSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5295933 5303208 + CmaCh13G004950.1 Cma13g00495 306322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00495 844 CDD START_ArGLABRA2_like 160 375 - -
Cma13g00495 844 CDD homeodomain 18 78 IPR001356 GO:0003677
Cma13g00495 844 SMART HOX_1 15 81 IPR001356 GO:0003677
Cma13g00495 844 Gene3D - 185 373 IPR023393 -
Cma13g00495 844 ProSiteProfiles START domain profile. 156 369 IPR002913 GO:0008289
Cma13g00495 844 CDD bZIP 70 109 - -
Cma13g00495 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cma13g00495 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cma13g00495 844 Coils Coil 87 107 - -
Cma13g00495 844 Pfam MEKHLA domain 699 843 IPR013978 -
Cma13g00495 844 Gene3D - 10 84 - -
Cma13g00495 844 SUPERFAMILY Bet v1-like 166 355 - -
Cma13g00495 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 - -
Cma13g00495 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cma13g00495 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 IPR044830 GO:0003700
Cma13g00495 844 Pfam START domain 166 373 IPR002913 GO:0008289
Cma13g00495 844 SMART START_1 165 374 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00063 Cma13g00495 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00495 Cma-Chr13:5295933 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma13g00495 Cma-Chr13:5295933 Cma03g01446 Cma-Chr3:9047294 0 wgd
Cma13g00495 Cma-Chr13:5295933 Cma07g00063 Cma-Chr7:343575 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36091 PF01852 START 4.40E-52 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00495 K09338 - csv:101211318 1584.7