Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00505 ATGTTAGAACAGCTCGCACGAGGCTCAGACGGGGAGGACCTACCTTACGAATCCGCCATTAATTCCAATTCCAGTCAAAATTCCATGAGCAGTGACAGTTGCAGCAGTTTCAGTCGTCTCTCATTCGACGCCGCCACTGATTTACCCACATCCCGATCCTCACCGGAGAGTCTCGATTTAAAGCCTCACCGATCATCTGATTTCGCTTACTCTGCTATTCGTCGTCGGAAGTCCAAACTCACCTTCCGTGATTTTCGTCTCCTCCGCCGCATCGGTGCCGGTGACATTGGCACCGTCTACCTATGTCAGCTTAGAAACTCAACCGAAGGTTGTTATGAAGATGAAGAAGACGATTCCTGTTTGTACGCCATGAAAGTGGTGGATAAGGATGCTCTGGAATTGAAGAAAAAGGTGCACAGAGCAGAAATGGAGAGGAAAATATTGAAAATGCTTGACCATCCGTTTTTGCCTACTCTTTACGCTGAATTTGAAGCTTCCCATTTCTCTTGCATCGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGGAAACGCTTCTCTCTCGCCTCTGCAAGGTTTTACGCCGCTGAAGTTCTTGTTGCTTTAGAGTATCTTCACATGCTTGGAATTATTTACAGAGACCTTAAGCCGGAGAATGTTCTCGTCCGATCAGATGGTCATATTATGTTATCGGATTTCGATTTATCTCTCTGTTCCGACGCTACTCCAGCCGTTGAATCGCCGAATTCCTCCCCTAATCCGGCATTGCCCGACTCAACGGCGTTCCCCAGAACCAACGCCGCCGCTGCCGCCTCCACAGCTCCATTTTCCTGCCTCTATAATCGGCTTTTCCGGTCGCGGAAGGTCCAAACCTTGACACCCAACTGGCTCTTTGTTGCGGAGCCTGTCTCCGCTCGGTCGTGCTCCTTCGTCGGTACCCATGAATATGTCTCGCCGGAAGTTGCCGCCGGCGGATCCCACGGCAACGCCGTCGACTGGTGGGCGTTCGGAGTGTTTCTCTACGAGCTGATCTATGGCCGGACGCCTTTCGCAGCGTCATCGAACGAGACGACGCTAAGGAACATCATAAAGAAGCCGTTGACGTTTCCGACCACGGGGTCGTCTGGGACGCTTGAACACCACGCGCGGGACCTGATATCCGGGTTGCTAAACAAAGACCCGACCCGAAGACTCGGGTCGAAACGCGGATCCGCCGACATAAAAAAGCACCCGTTCTTCAAGAGCCTGAACTTCGCCCTCATTCGGTCGCTGACTCCGCCGGAAGTTCCCGGCGTTGTAGTTCCGCAGAAGCCAAAGCCGAAGCCGATAGCGTCAAGCAAAGCCAAGGTGAAGCCGGCTCATTCAGCTGGGTTCGATTACTTCTGA 1407 52.45 MLEQLARGSDGEDLPYESAINSNSSQNSMSSDSCSSFSRLSFDAATDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNSTEGCYEDEEDDSCLYAMKVVDKDALELKKKVHRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLASARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPNPALPDSTAFPRTNAAAAASTAPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTTGSSGTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLTPPEVPGVVVPQKPKPKPIASSKAKVKPAHSAGFDYF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5383852 5386051 + CmaCh13G005050.1 Cma13g00505 306332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00505 468 MobiDBLite consensus disorder prediction 439 468 - -
Cma13g00505 468 PANTHER FLIPPASE KINASE 1-RELATED 13 447 - -
Cma13g00505 468 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 13 447 - -
Cma13g00505 468 SUPERFAMILY Protein kinase-like (PK-like) 64 437 IPR011009 -
Cma13g00505 468 MobiDBLite consensus disorder prediction 16 36 - -
Cma13g00505 468 Gene3D Transferase(Phosphotransferase) domain 1 176 243 - -
Cma13g00505 468 Gene3D Transferase(Phosphotransferase) domain 1 313 438 - -
Cma13g00505 468 ProSiteProfiles Protein kinase domain profile. 85 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00505 468 SMART serkin_6 85 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00505 468 MobiDBLite consensus disorder prediction 1 36 - -
Cma13g00505 468 Gene3D Phosphorylase Kinase; domain 1 83 175 - -
Cma13g00505 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cma13g00505 468 Pfam Protein kinase domain 314 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00505 468 Pfam Protein kinase domain 86 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00505 Cma18g00495 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00505 Cma-Chr13:5383852 Cma12g01220 Cma-Chr12:9513718 2.93E-144 dispersed
Cma13g00505 Cma-Chr13:5383852 Cma18g00495 Cma-Chr18:2891742 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68999 PF00069 Pkinase 4.90E-32 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00505 - - csv:101208129 736.873