Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00511 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGCCGCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCACTCGCGTTGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTCGATGCCCAGATCCCGAATTACCCGAGTTTACCGCCACAACTCATCTGTCAGCTTCATAACCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCACAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAAGAAGCCTACCTTCCAGCTGAGTTGGGGTCTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCCAGTGATACGAGCACACATGGCGGTTTTTCTGTTCCTCGTCGTGCTGCCGAGAAAGTATTCCCCCCTTTGGACTTCTCCATGCAGCCCCCAGCTCAAGAGCTGATAGCGAGGGACTTACATGATAATGAATGGAAATTTAGACATATATTTCGTGGCCAGCCTAAAAGACACCTTTTAACAACTGGATGGAGTGTGTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTTCTTTTTATCTGGAATGAGAAGAATCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCAAGTGATAGTATGCATTTAGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCTACCAACAGTCGATTTACCATATTTTTTAACCCAAGAGCTAGCCCTTCAGAGTTTGTCATACCACTGACTAAATACGTGAAGGCTGTCTACCATACTCGTGTTTCTGTTGGTATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGACGAATCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCTCCATTTCCACTTCGGCTGAAGCGACCATGGCCAACGGGACTGCCTTCTTTCGGCATCAAGGATAGCGACCTCGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAATTGTCTAAACTTTCAGGGAAACGGGGTCTCACCGTGGATGCAACCAAGGCTTGATACATCCATGATGGCAATGCAACCTGACATGTACCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGAGCAATCGATTATTCGAAAATAGCACCTGCATCTGTTCTGCAATTCCAGCAGTCCCAAGCCCTTCCTTGTCAGTCTTCTTCCTTAATGCAGCCTCAGATGATGCATCAGTCTCAACCCCAGCAGGCGTTTCTACAATCCATTCAAGAAAACCAACAGCATCATCTTCAGCCACAATTGCAGCCCCAGCAATTCAATAATCAACAACAGCAACCAAGGCAGCCACAGCCACCGCAACTCGATCATCAGCAGATTCCTTGTACGATACCGGCGGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTTGCCGTCCCTGCAAACCATCCCTTCCCTTTGCCAACAACCGAGTTTTTCCGACTCCAATTGTAACCCCGTAACTACTACTGTTTCCCCATTGCATAGCCTTGCGGGGTCGTCATCCGTTCAAGACGAATCGTCTCAGCTGCTTAACCTTCAAAGAGCAAATTCAATAATTCCTTCAGCTGGCTGGCCAGCAAAGAGAGCTGCTATTGACCCTCTCACTACTGGAGCTTCTCAATATTTTCTGCCTCAAGGGGAAATTTTGGGAACATCACAGAGTAGTATTCCTCAGAATACAGTGGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTAGTGATGACCGAGACGACGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAATGACAGTGTTTCTGCAACTCCACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCATCCACCCAATGGAACCTTTGTCAAGGTTCACAAGTCAGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAACGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTATATCAAAATACTTTCACCAGAAGAAGTTCATGAAATGGGCAAACGAGGTTTAGAATTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTTGGGCCTCTCGACTACTGA 2652 47.96 MRLSAAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGTRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGSPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNCLNFQGNGVSPWMQPRLDTSMMAMQPDMYQAMATAALQEMRAIDYSKIAPASVLQFQQSQALPCQSSSLMQPQMMHQSQPQQAFLQSIQENQQHHLQPQLQPQQFNNQQQQPRQPQPPQLDHQQIPCTIPAAISQFASCSQSQLPSLQTIPSLCQQPSFSDSNCNPVTTTVSPLHSLAGSSSVQDESSQLLNLQRANSIIPSAGWPAKRAAIDPLTTGASQYFLPQGEILGTSQSSIPQNTVALPPFPGRECSSDDRDDGSDPQNHVLFGVNIESSSLLMQNGASHLRGVGNDSVSATPPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWYIKILSPEEVHEMGKRGLEFLNSVPIQRLSNSTCDDYGSRQDSRNLVSGITSVGPLDY 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5418480 5424837 + CmaCh13G005110.1 Cma13g00511 306338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00511 883 PANTHER AUXIN RESPONSE FACTOR 6 1 862 - -
Cma13g00511 883 SMART B3_2 127 229 IPR003340 GO:0003677
Cma13g00511 883 Gene3D - 291 363 - -
Cma13g00511 883 ProSiteProfiles PB1 domain profile. 750 834 IPR000270 GO:0005515
Cma13g00511 883 Gene3D - 125 228 IPR015300 -
Cma13g00511 883 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma13g00511 883 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cma13g00511 883 Gene3D - 748 839 - -
Cma13g00511 883 MobiDBLite consensus disorder prediction 507 527 - -
Cma13g00511 883 Pfam AUX/IAA family 746 839 IPR033389 -
Cma13g00511 883 SUPERFAMILY CAD & PB1 domains 747 825 - -
Cma13g00511 883 MobiDBLite consensus disorder prediction 644 669 - -
Cma13g00511 883 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cma13g00511 883 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 862 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma13g00511 883 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cma13g00511 883 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01429 Cma13g00511 CCT
Cma13g00511 Cma18g00491 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00728 Cma-Chr5:4096173 Cma13g00511 Cma-Chr13:5418480 8.67E-27 dispersed
Cma12g01336 Cma-Chr12:10158039 Cma13g00511 Cma-Chr13:5418480 0 dispersed
Cma13g00511 Cma-Chr13:5418480 Cma15g00776 Cma-Chr15:3829460 0 dispersed
Cma13g00511 Cma-Chr13:5418480 Cma18g00491 Cma-Chr18:2810959 0 wgd
Cma13g00511 Cma-Chr13:5418480 Cma03g01429 Cma-Chr3:8950035 0 wgd
Cma13g00511 Cma-Chr13:5418480 Cma07g00079 Cma-Chr7:469263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36092 PF02309 AUX_IAA 7.30E-07 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00511 - - csv:101211705 1543.48