Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00516 | ATGGACAGCGGCGGTGGAAGGTTGAAGGCCTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGACGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCCGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCTGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGCGGTGTAATTCTTTTCGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGGCAATTCCACGTTCATTCTATCATCAGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAACGAAACAGGGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTTAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGCGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCGCTGTACATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAGGATGCAGACGAAGGAGATAGTGGTTCGTTTATGTGTCTCTTCAGTGAACGGTGCAAGTGCAAGTGTCTCGAAGCCGAGCCAAGAAGTTCTCCCTGCTTACTGACAGCAGCATATTTGAACTCTGTATTGTGGTTCCATCCATAA | 1518 | 42.82 | MDSGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKAIPRSFYHQIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDADEGDSGSFMCLFSERCKCKCLEAEPRSSPCLLTAAYLNSVLWFHP | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5462466 | 5468743 | - | CmaCh13G005160.1 | Cma13g00516 | 306343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00516 | 505 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 299 | IPR011009 | - | |
Cma13g00516 | 505 | PANTHER | SERINE/THREONINE KINASE | 18 | 460 | - | - | |
Cma13g00516 | 505 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 103 | - | - | |
Cma13g00516 | 505 | Gene3D | Kinase associated domain 1, KA1 | 330 | 455 | - | - | |
Cma13g00516 | 505 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524 | |
Cma13g00516 | 505 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma13g00516 | 505 | ProSiteProfiles | Protein kinase domain profile. | 24 | 288 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00516 | 505 | CDD | STKc_SnRK3 | 23 | 287 | - | - | |
Cma13g00516 | 505 | ProSiteProfiles | NAF domain profile. | 330 | 354 | IPR018451 | GO:0007165 | |
Cma13g00516 | 505 | CDD | CIPK_C | 336 | 451 | - | - | |
Cma13g00516 | 505 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 18 | 460 | - | - | |
Cma13g00516 | 505 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672|GO:0006468 | |
Cma13g00516 | 505 | Pfam | Protein kinase domain | 24 | 288 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00516 | 505 | SMART | serkin_6 | 24 | 288 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00516 | 505 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 295 | - | - | |
Cma13g00516 | 505 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cma13g00516 | 505 | Pfam | NAF domain | 332 | 392 | IPR004041 | GO:0007165 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01424 | Cma13g00516 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00994 | Cma-Chr6:6719204 | Cma13g00516 | Cma-Chr13:5462466 | 0 | dispersed | |
Cma06g01592 | Cma-Chr6:9929518 | Cma13g00516 | Cma-Chr13:5462466 | 2.03E-150 | dispersed | |
Cma12g00176 | Cma-Chr12:803794 | Cma13g00516 | Cma-Chr13:5462466 | 8.38E-159 | dispersed | |
Cma13g00516 | Cma-Chr13:5462466 | Cma14g02137 | Cma-Chr14:14655135 | 0 | dispersed | |
Cma17g00037 | Cma-Chr17:160761 | Cma13g00516 | Cma-Chr13:5462466 | 2.31E-86 | dispersed | |
Cma02g01191 | Cma-Chr2:7043044 | Cma13g00516 | Cma-Chr13:5462466 | 0 | transposed | |
Cma13g00516 | Cma-Chr13:5462466 | Cma03g01424 | Cma-Chr3:8903484 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69000 | PF00069 | Pkinase | 4.80E-75 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00516 | - | - | csv:101222334 | 858.596 |