Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00516 ATGGACAGCGGCGGTGGAAGGTTGAAGGCCTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGACGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCCGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCTGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGCGGTGTAATTCTTTTCGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGGCAATTCCACGTTCATTCTATCATCAGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAACGAAACAGGGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTTAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGCGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCGCTGTACATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAGGATGCAGACGAAGGAGATAGTGGTTCGTTTATGTGTCTCTTCAGTGAACGGTGCAAGTGCAAGTGTCTCGAAGCCGAGCCAAGAAGTTCTCCCTGCTTACTGACAGCAGCATATTTGAACTCTGTATTGTGGTTCCATCCATAA 1518 42.82 MDSGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKAIPRSFYHQIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDADEGDSGSFMCLFSERCKCKCLEAEPRSSPCLLTAAYLNSVLWFHP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5462466 5468743 - CmaCh13G005160.1 Cma13g00516 306343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00516 505 SUPERFAMILY Protein kinase-like (PK-like) 21 299 IPR011009 -
Cma13g00516 505 PANTHER SERINE/THREONINE KINASE 18 460 - -
Cma13g00516 505 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Cma13g00516 505 Gene3D Kinase associated domain 1, KA1 330 455 - -
Cma13g00516 505 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Cma13g00516 505 MobiDBLite consensus disorder prediction 1 23 - -
Cma13g00516 505 ProSiteProfiles Protein kinase domain profile. 24 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00516 505 CDD STKc_SnRK3 23 287 - -
Cma13g00516 505 ProSiteProfiles NAF domain profile. 330 354 IPR018451 GO:0007165
Cma13g00516 505 CDD CIPK_C 336 451 - -
Cma13g00516 505 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 460 - -
Cma13g00516 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Cma13g00516 505 Pfam Protein kinase domain 24 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00516 505 SMART serkin_6 24 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00516 505 Gene3D Transferase(Phosphotransferase) domain 1 104 295 - -
Cma13g00516 505 MobiDBLite consensus disorder prediction 1 19 - -
Cma13g00516 505 Pfam NAF domain 332 392 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01424 Cma13g00516 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00994 Cma-Chr6:6719204 Cma13g00516 Cma-Chr13:5462466 0 dispersed
Cma06g01592 Cma-Chr6:9929518 Cma13g00516 Cma-Chr13:5462466 2.03E-150 dispersed
Cma12g00176 Cma-Chr12:803794 Cma13g00516 Cma-Chr13:5462466 8.38E-159 dispersed
Cma13g00516 Cma-Chr13:5462466 Cma14g02137 Cma-Chr14:14655135 0 dispersed
Cma17g00037 Cma-Chr17:160761 Cma13g00516 Cma-Chr13:5462466 2.31E-86 dispersed
Cma02g01191 Cma-Chr2:7043044 Cma13g00516 Cma-Chr13:5462466 0 transposed
Cma13g00516 Cma-Chr13:5462466 Cma03g01424 Cma-Chr3:8903484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69000 PF00069 Pkinase 4.80E-75 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00516 - - csv:101222334 858.596