Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00541 ATGGCGGCCTCTGCAATGGCTCTCTCCTCTCCGTCTCTTGCCGGAAAGGCAGTTAAACTCACTCCCTCCTCCTCGGAGCTTGTCGGCAATGGCAGAGTCAGCATGAGGAAATCCGCCGCCAAATCTGTTTCTTCTGGAAGCCCATGGTACGGACCTGACCGTGTCAAGTATTTGGGTCCATTCTCCGGCGAGTCTCCGTCCTACCTCACCGGGGAGTTCCCCGGTGACTATGGCTGGGACACTGCCGGACTTTCTGCTGACCCTGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTTATCCACTCGAGGTGGGCTATGCTCGGAGCCTTGGGGTGCGTGTTCCCGGAGCTTCTATCCCGCAACGGCGTGAAGTTTGGGGAAGCGGTGTGGTTCAAGGCAGGTTCTCAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATATGGGCATCGCAGGTGGTTCTGATGGGGGCGGTTGAGGGATACCGTATTGCCGGTGGGCCATTGGGGGAGGTGACGGATCCGATATACCCGGGTGGGAGCTTTGACCCGTTGGGACTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAGGTGAAGGAGCTTAAGAATGGGAGATTGGCCATGTTCTCGATGTTCGGCTTCTTTGTTCAGGCCATCGTGACTGGAAAGGGCCCATTGGAGAATCTTGCCGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCCACCAACTTTGTCCCTGGAAAATAA 798 56.52 MAASAMALSSPSLAGKAVKLTPSSSELVGNGRVSMRKSAAKSVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5617065 5618965 - CmaCh13G005410.1 Cma13g00541 306368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00541 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Cma13g00541 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cma13g00541 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cma13g00541 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Cma13g00541 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00265 Cma-Chr1:1250267 Cma13g00541 Cma-Chr13:5617065 1.99E-173 dispersed
Cma01g00890 Cma-Chr1:5137054 Cma13g00541 Cma-Chr13:5617065 7.58E-67 dispersed
Cma13g00541 Cma-Chr13:5617065 Cma20g00260 Cma-Chr20:1270014 1.28E-176 dispersed
Cma13g00541 Cma-Chr13:5617065 Cma03g01380 Cma-Chr3:8755528 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00541 K08912 - cpap:110819729 518.85