Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00555 ATGCCATGTTCTTCCTGTACAAAGCACTTCTTCCAGCGCTTCTTCACCGACGAGTTCCAAACCAACGGTGCTCTTCAAAGCACTTTCTTGTCCCCTGACCTGTTGCCATCTCTCGGCGCCACCATCAACCAATCCACCAAGCTTCGTAAACACATCATTTCCCCTTTCAACCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGCTCTAGTCATTTACTCTGCTTGGATTTGTCCTTTTGAATTCGCATTCCTTCCCTACAAACAAAATTCTCTCTTCATCATAGATCACTTCGTCAATGCCTTCTTCGCCGTCGATATCGTTTTGACTTTCTTCGTCGCCTATCTTGACTCTCAATCTTATCTTCTCGTTGACCACCCCAAGAAAATTGCAGTCAGGTATTTATCGACTTGGTTTATTTTCGACGTTTGTTCGACGGCGCCATTGCAGTCGATTAGTTTCTTGTTCACCAATCAAAGTGGGGAAGTTGGGTTTAAGCTTCTGAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTTGAAAAGGACATCAGGTTCAATTATTTCTGGACTCGTTGCACAAAGTTAATTTCTGTAACGTTATTTGCAGTACATTGTGCTGGGTGCTTCAATTTCTTAATAGCAGACAAATATCCGGACCCAAAACGAACATGGATTGGCGCAGTGAACCCAAATTTCAAGGAAGATAGCCTATGGAACCTTTACATTACTGCAATTTACTGGTCCATTACCACCTTAACCACCACTGGCTATGGCGATCTCCATGCAGAGAACCCCAGAGAAATGCTTTTTGACATCTTTTACATGCTCTTCAACTTAGGCTTGACTTCTTATCTCATCGGTAACATGACGAATCTCGTCGTCCATTGGACGAGTCGCACTCGAAACTTTAGGGATTCGGTACGAGCTGCCACAGAGTTCGCGTCGAGAAATCAGCTACCGAATCCCATACAAAACCAGATGCTGTCTCATATATGTCTCAAGTTTAGAACCGAAGGGCTGAAGCAGCAAGACACATTGAATGACCTTCCAAAGGCCATTAGAGTCTCCATAGCTCACTATCTCTTCTATCCCATTGTTCAGAAGGCCTACCTCTTTGAAGGAGTTTCTCATGACTTCCTTTTCCAACTGGCCTCAGATGTGGAGGCTGAGTATTTCCCACCAAAGGAAGATGTTATACTCCAAAATGAAGCTCAAACGGATCTCTATATATTGGTTTCAGGCAGTGTGGATTTAATATCCAAAATTGATGGGCATGATCAAGTTATTGGAAGAGCAACAGGTGGAGACACATTCGGAGAACTTGGAGTTTTATGTCAAAAGCCACAGCCTTTCACAGTTAGAACAACAAATCTTTCGCAAATTTTAAGGATCAAGAGAGCTTCTTTGTTGTATATTATTCAATCAAACGCAGAAGATGGGAATATTATCATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATAATGGGCGATGTTTGGTGTGATGGTGGGCTAAAGAAGCTTGGAGATCAGTGTGAAGATGAGGATGAAAATTTGGGAAGCTTAGATGAACATAGAATTGAGTTTGATGAACAGCTTGAAGGAGGTGAAAACGACATTAATTTGTCTCATAACAACAAGTTACTAGCAAGAAATGGAGGTGGTCGGTCGGATTTTATTAGTTCCTCGTTAGAAAACTTGCCCACGAGCTCTTACTCGAATGTCTCGAGACAAATCAAGAAAAGGGTTACCGTATTTATACAGCCTCGAGATAGAAGCAAGGTTGAAAGTCAATATGGAAAGTTAATGCTTCTCCCGAATTCGATCGAAGAGCTTTGTAAAGTTGCTGGTGAGAAGTTTGGAAGGGAAATGCCCACAAAAGTGATGAATGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGTAACCAGTCGGGAAGAGAGAGATCGTTTACAGAGACATCAGCAGCTTCTCTTTTCCTCCAAGATGGTGACTTTTAGGTTCCACCAATACCAGGTTGTGGGGAGGGCTCTTCCTTCTGAATCAGATGAACATCCGAAGATATACCGAATGAAGCTATGGGCCACGAATGAGGTCCGAGCTAAGTCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAGGTCAAGAAGAGTAATGGGCAAGTTCTTGCTATTAATGAGATCTTTGAGAAGAATCCTACCAAAATCAAGAACTATGGTATCTGGTTGCGCTACCAAAGCCGAACGGGGTATCACAACATGTACAAGGAATATCGCGACACCACTCTCAATGGCGCTGTGGAACAAATGTACAACGAGATGGCTTCGCGACACAGGGTCAGACATCCATGCATCCAAATCATCAAGACTGCCACTGTTCCTGCTAAGCTGTGCAAAAGGGAAAGCACCAAACAATTCCACGACTCCAAGATCAAATTCCCTCTGGTGTTCAAGAAGGTTAGACCCCCAACCAGGAGGCTGAAGACCACATACAAGGCCTCAAAACCCAATCTATTCATGTTTTACCTTTCACTTCCTTTTGTTAGCAACGAATGTTCCAATTTTTATTCGAGGATCCCAAATTTTGCTTTTGCCTTTTCTTTTTCCTGCTCAGTCGTCCTGGAAGTGCTTTGA 2670 43.03 MPCSSCTKHFFQRFFTDEFQTNGALQSTFLSPDLLPSLGATINQSTKLRKHIISPFNPRYRAWEMWLVALVIYSAWICPFEFAFLPYKQNSLFIIDHFVNAFFAVDIVLTFFVAYLDSQSYLLVDHPKKIAVRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFLIADKYPDPKRTWIGAVNPNFKEDSLWNLYITAIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPNPIQNQMLSHICLKFRTEGLKQQDTLNDLPKAIRVSIAHYLFYPIVQKAYLFEGVSHDFLFQLASDVEAEYFPPKEDVILQNEAQTDLYILVSGSVDLISKIDGHDQVIGRATGGDTFGELGVLCQKPQPFTVRTTNLSQILRIKRASLLYIIQSNAEDGNIIMNNFFMKMKEYERIMGDVWCDGGLKKLGDQCEDEDENLGSLDEHRIEFDEQLEGGENDINLSHNNKLLARNGGGRSDFISSSLENLPTSSYSNVSRQIKKRVTVFIQPRDRSKVESQYGKLMLLPNSIEELCKVAGEKFGREMPTKVMNADNAEIDDINVIRDVTSREERDRLQRHQQLLFSSKMVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRHPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASKPNLFMFYLSLPFVSNECSNFYSRIPNFAFAFSFSCSVVLEVL 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5665470 5675054 - CmaCh13G005550.1 Cma13g00555 306382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00555 889 Gene3D Helix hairpin bin 302 368 - -
Cma13g00555 889 SUPERFAMILY cAMP-binding domain-like 305 494 IPR018490 -
Cma13g00555 889 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 681 802 IPR023573 GO:0003735|GO:0005840|GO:0006412
Cma13g00555 889 Gene3D - 61 301 - -
Cma13g00555 889 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma13g00555 889 PANTHER POTASSIUM CHANNEL AKT1 5 653 IPR045319 GO:0005249|GO:0006813
Cma13g00555 889 Pfam Cyclic nucleotide-binding domain 398 483 IPR000595 -
Cma13g00555 889 CDD CAP_ED 378 491 IPR000595 -
Cma13g00555 889 Hamap 50S ribosomal protein L18Ae [rpl18a]. 680 743 IPR028877 -
Cma13g00555 889 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma13g00555 889 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma13g00555 889 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma13g00555 889 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma13g00555 889 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma13g00555 889 SMART cnmp_10 378 495 IPR000595 -
Cma13g00555 889 ProSiteProfiles KHA domain profile. 591 677 IPR021789 -
Cma13g00555 889 Gene3D - 746 821 - -
Cma13g00555 889 PANTHER POTASSIUM CHANNEL KAT1 5 653 - -
Cma13g00555 889 SUPERFAMILY Voltage-gated potassium channels 55 300 - -
Cma13g00555 889 Pfam KHA, dimerisation domain of potassium ion channel 590 653 IPR021789 -
Cma13g00555 889 SUPERFAMILY RplX-like 745 820 - -
Cma13g00555 889 Gene3D Jelly Rolls 371 508 IPR014710 -
Cma13g00555 889 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Cma13g00555 889 Gene3D - 671 745 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00555 Cma18g00463 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01314 Cma-Chr1:9382776 Cma13g00555 Cma-Chr13:5665470 3.12E-120 dispersed
Cma04g00529 Cma-Chr4:2693113 Cma13g00555 Cma-Chr13:5665470 1.39E-172 dispersed
Cma09g00494 Cma-Chr9:2207121 Cma13g00555 Cma-Chr13:5665470 2.28E-180 dispersed
Cma09g00729 Cma-Chr9:3479194 Cma13g00555 Cma-Chr13:5665470 2.59E-116 dispersed
Cma10g00578 Cma-Chr10:2647001 Cma13g00555 Cma-Chr13:5665470 0 dispersed
Cma11g00553 Cma-Chr11:2667971 Cma13g00555 Cma-Chr13:5665470 0 dispersed
Cma13g00555 Cma-Chr13:5665470 Cma16g00383 Cma-Chr16:1848720 1.33E-170 dispersed
Cma18g00464 Cma-Chr18:2569354 Cma13g00555 Cma-Chr13:5665470 3.74E-120 dispersed
Cma13g00555 Cma-Chr13:5665470 Cma18g00463 Cma-Chr18:2560657 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00555 K21867 - csv:101215858 1092.8