Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00567 ATGGAGAACAATCGGGGAGGAATGGCGGCGTTTTCGTCCTCGGCGGAAAGCAATATCAGGGCTCGACCGAGCAACACCGCTAGCACCGACAACAGAGCTGCGGCACTTGTGCAATACAATGCTGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGACGCCTTTGGTGAGTCTTTTAACTATTCGAGATCAGTTCTTGAAGCTCCACAGTCTGTACCCGAAGAACAAATTACTGCCTATCTGTCTAAGATTCAGAGGGGTGGAATGGTTCAACCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTCTTAAGATTATTAGCTACAGTGAGAATTGTTTTGACTTATTGGGGATAAATGATCAGTTTGAGTCGGCACCGGGGAAGGGTCTAATTGGGGTTCATATAAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCGAAAGCTGCTTCATCCAGGGAGATTTCGCTGTTGAATCCTGTTTGGGTTTATTCTAGGAATACCCAGAAGCCATTTTATGCCATATTGCATAGGATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCACTGTCGCTTGCCGGCGCCGTGCATTCGCAGAAACTTGCAGTTCGAGCCATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAAGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCGGACTTGGAGCCATATCTCGGTTTGCACTATCCTGCCATTGATATACCCCAAGCTGCTCGTTTCTTGTTCAAGCAGAACCGCGTTAGGATGATTTGCGATTGCCATGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCACATAGTTGTCATTTGCAGTACATGGCAAATATGGGTTCCATAGCCTCATTGGCAATGGCAGTAATCATGAACAGTGATGACTCTCCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCACCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCTTTCGGGCTGCAACTTTACATGGAGCTTCAATTGGCATTACAAATAACAGAGAAAAAGGTTCTCAAGACACAAACCTTACTCTGTGACATGCTCCTCCGAGGCTCCCCTTATGCATTGCTGACCCAGTCACCTAGTATAAAGGATCTCGTGAAGTGTGATGGCGCTGCATTGTACTATCAGGGGGCATGTTGTCTACTAGGTGTAACTCCAACTGAAGCCCAAGTTAAAAACCTTGTCGAGTGGATACTCAATAACCATGGAGATTCTACAGGACTGAGCACGGATAGCTTGGCTGATGCTGGCTATCCCGAAGCTGCTTCACTAGGTGATGCAATATGTGGTATGACTGCTGCAAGAATTAGTTCAAAAGATTTCTTATTCTGGTTCCGTTCCCATGCCGCAAAAGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCAAGGTCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAAAAGTATGTCATGGGAAGCTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATTATGAGGGAGTCTTTCTCGAGCGCTAGAGACAGTGATTCGAAGGCAGAAATGTCTGTCCAGCAGAGTGATACTGTGTCTCAGGACATCGGCGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACCGTTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAAATAGCTGAACTCGTAGGATTACAAACTGGAGAAGCTTTGGGGAGATCTCTGGATGACATCGTTCATGATGATTCACGAGGAACCGTTGGAAATTTACTTCTTCATGCTCTGCAAGGTGTGGAAGACAAAAATGTGGAGTTAAAACTGAGAAAGTTTGGAACTGATAAAGAAAACTCTGCTGTGTATATTGTAGTTAATGCTTGCACAAGTAGGCATTACACAAATAAAGTTATTGGGGTTTGCTTTGTTGGGCAAGATATAACGTCGGAGAAAGGCGTGAGGGATAGATTTATCCGTCTGCAGGGAGATTATAGGACAATCATTGAAAGTCTGAGTCCATTGATTCCACCAATTTTCGTTTCTGACGAGAATGGTTACTGCTGTGAATGGACTGCTGCCATGGAGAAGCTTTCTGGTTGGAGTAAAGATGAAGTTGTAGGAAAAATGCTAGTAGGGGAGATTTTTGGGAACTTCTGTAGGTTGAAAGATCTAGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGTATTGGTGGTGAACAAACTGAGAAGTTTCCATTAGGATTTTTCAATAAGAATGGTGACTATGTGGAGGTGCTTTTAACATCAAACAAAAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGTTTCCTGCAAGTTGTTGAGCCGAACTTGCAAGGGGTCTCTGAAGGACTCGGCCTGGGCGAAAGACGGGGCAATTTGCAGCTTAAGGAGTTGACTTACTTAAAGCGGGAGATGAAAAATCCTTTAAATGGCATCAAATTTACTCATGAACTCCTTGTAAATTCTGGCATTACAGACAACCAGAAACTCTTCCTTGTTACTAGTGATGCGTGCGAGAGACAGATCATGGCAATCATTGAGGATATGGACTTCAGAAGTTTAGAAGTGGGCCAAGTACAGATAAATAAAGACGAGTTTGTCCTTGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAAGAACATACAACTGTTTCATGAAATTCCAGAAGAAATCAAAGTGTTAACTTTTTGTGGCGATCAAATTAAACTTCAGCTGGTTTTATCAGATTTCTTACTTAGCGTAGTGCAGAACACGCCTGCTCTGGATGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATGTGGTTGGAGGAGGACAACAGTGGAGTTCAGAGCAAGGCCTCGCCCTAAATCTGTCACGCAGACTTCTCAATAAATTGAACGGTAATGTCTGCTACGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATCTCGAACTCAAATTAAGGCGCTCGAGGGGGTTGCTGGAAGCCACTACAAGCCAAAGAACTTGA 3381 43.74 MENNRGGMAAFSSSAESNIRARPSNTASTDNRAAALVQYNADAGLLNKFEQSDAFGESFNYSRSVLEAPQSVPEEQITAYLSKIQRGGMVQPFGCLLAIEESSLKIISYSENCFDLLGINDQFESAPGKGLIGVHIRALFTPSSGASLAKAASSREISLLNPVWVYSRNTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSIASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQITEKKVLKTQTLLCDMLLRGSPYALLTQSPSIKDLVKCDGAALYYQGACCLLGVTPTEAQVKNLVEWILNNHGDSTGLSTDSLADAGYPEAASLGDAICGMTAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSKSMSWEAQEINAIHSLQLIMRESFSSARDSDSKAEMSVQQSDTVSQDIGELSSVACEMVRLIETATVPIFGVDSTGVINGWNAKIAELVGLQTGEALGRSLDDIVHDDSRGTVGNLLLHALQGVEDKNVELKLRKFGTDKENSAVYIVVNACTSRHYTNKVIGVCFVGQDITSEKGVRDRFIRLQGDYRTIIESLSPLIPPIFVSDENGYCCEWTAAMEKLSGWSKDEVVGKMLVGEIFGNFCRLKDLDTLTRFMILLYQGIGGEQTEKFPLGFFNKNGDYVEVLLTSNKRTDAEGNVIGCICFLQVVEPNLQGVSEGLGLGERRGNLQLKELTYLKREMKNPLNGIKFTHELLVNSGITDNQKLFLVTSDACERQIMAIIEDMDFRSLEVGQVQINKDEFVLGSVLDAIICQIMIVVREKNIQLFHEIPEEIKVLTFCGDQIKLQLVLSDFLLSVVQNTPALDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDVVGGGQQWSSEQGLALNLSRRLLNKLNGNVCYVREQTKCYFLIDLELKLRRSRGLLEATTSQRT 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5738467 5745279 + CmaCh13G005670.1 Cma13g00567 306394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00567 1126 TIGRFAM sensory_box: PAS domain S-box protein 745 862 IPR000014 -
Cma13g00567 1126 TIGRFAM sensory_box: PAS domain S-box protein 618 734 IPR000014 -
Cma13g00567 1126 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 386 IPR016132 -
Cma13g00567 1126 Pfam Phytochrome region 409 583 IPR013515 GO:0006355|GO:0009584
Cma13g00567 1126 Pfam PAS fold 79 192 IPR013654 GO:0006355
Cma13g00567 1126 SUPERFAMILY PYP-like sensor domain (PAS domain) 617 724 IPR035965 -
Cma13g00567 1126 Gene3D PAS domain 757 867 - -
Cma13g00567 1126 ProSiteProfiles PAS repeat profile. 744 796 IPR000014 -
Cma13g00567 1126 CDD PAS 622 728 IPR000014 -
Cma13g00567 1126 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 193 IPR035965 -
Cma13g00567 1126 PANTHER PHYTOCHROME E 31 1115 - -
Cma13g00567 1126 SMART pas_2 743 813 IPR000014 -
Cma13g00567 1126 SMART pas_2 613 679 IPR000014 -
Cma13g00567 1126 SUPERFAMILY GAF domain-like 404 581 - -
Cma13g00567 1126 ProSiteProfiles PAC domain profile. 684 740 IPR000700 -
Cma13g00567 1126 MobiDBLite consensus disorder prediction 1 27 - -
Cma13g00567 1126 SMART gaf_1 225 406 IPR003018 GO:0005515
Cma13g00567 1126 Gene3D - 928 1102 IPR036890 -
Cma13g00567 1126 ProSiteProfiles PAS repeat profile. 611 681 IPR000014 -
Cma13g00567 1126 Gene3D PAS domain 612 732 - -
Cma13g00567 1126 SMART HisKA_10 885 949 IPR003661 GO:0000155|GO:0007165
Cma13g00567 1126 Gene3D - 206 557 IPR029016 -
Cma13g00567 1126 Gene3D PAS domain 83 328 - -
Cma13g00567 1126 CDD PAS 755 865 IPR000014 -
Cma13g00567 1126 ProSiteProfiles Histidine kinase domain profile. 892 1111 IPR005467 -
Cma13g00567 1126 Gene3D - 401 574 IPR043150 -
Cma13g00567 1126 SMART HKATPase_4 997 1109 IPR003594 -
Cma13g00567 1126 SUPERFAMILY PYP-like sensor domain (PAS domain) 746 860 IPR035965 -
Cma13g00567 1126 PANTHER TWO-COMPONENT HISTIDINE KINASE 31 1115 - -
Cma13g00567 1126 ProSitePatterns Phytochrome chromophore attachment site signature. 325 334 IPR013516 -
Cma13g00567 1126 Pfam GAF domain 225 396 IPR003018 GO:0005515
Cma13g00567 1126 SUPERFAMILY GAF domain-like 207 392 - -
Cma13g00567 1126 CDD HisKA 896 945 IPR003661 GO:0000155|GO:0007165
Cma13g00567 1126 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 426 446 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 511 530 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 544 562 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 614 630 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 633 648 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 706 723 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PRINTS Phytochrome signature 726 746 IPR001294 GO:0006355|GO:0009584
Cma13g00567 1126 PIRSF Phytochrome_conventional 11 1117 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma13g00567 1126 Pfam PAS fold 614 728 IPR013767 GO:0006355
Cma13g00567 1126 Pfam PAS fold 744 864 IPR013767 GO:0006355
Cma13g00567 1126 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1099 IPR036890 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00567 Cma18g00452 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00567 Cma-Chr13:5738467 Cma14g01590 Cma-Chr14:11927099 0 dispersed
Cma13g00567 Cma-Chr13:5738467 Cma18g00452 Cma-Chr18:2495903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00567 K12123 - csv:101214900 1913.27