Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00570 ATGTGCTGTCTTTTGCAAGCTCAGGTCCGATCCGCCCATGGCGTTTCCTCTACACTTTTGGAGTTTACTAAGCGCCGTATTATGCCCCCAAGGTTGAGATACGGAAGCCATAGTTGGTGTAAGATTGATGCAGCAGCTTGTTGGTTTGGCAGAGGGAATGAAGCCACTGGTCCGCTGAGTATAGTGATGTATGTATATACGCTCGATCTCACGAGTAGTGAACGAAAAATGGTAGTCGAAGAGACGATCAAAGCTACATCGATGGAAGATCTTTCTAATTCCATCGCAAATCAAAACCCTAGGGGACGAGGCAATGAGGAAGATGAGGATCTTGAGGAAGGAGAGATCGTCGGCGACGACGACCTGGACTCCTCCAATTTATCTGCGGCGATAGTGCATCAGCCTCACCCTCTGGAGCACCCTTGGACCTTTTGGTTCGATAACCCATCCGCCAAGTCCAAGCAAGCCACCTGGGGTGCGTCTATCCGACCGATATATACCTTCTCTACCGTGGAGGAGTTCTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGTTGAGGGCAGATTTGTACTGCTTCAAACATATAATTGAGCCTAAATGGGAGGATCCTGTCTGTGCGAATGGAGGGAAATGGACTGTGAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTATACACGCTGCTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCTGTTGTCAACGTTAGATCTGGGCAGGATAAAATATCGATTTGGACTAAGAATGCTTCCAATGAAGTGGCGCAGGCGAGCATTGGGAAGCAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGCTTTATATTCCACGAAGATGCAAAGAAGTTTGACAGGCATGCGAAGAACCGATATACGGTGTAA 936 46.9 MCCLLQAQVRSAHGVSSTLLEFTKRRIMPPRLRYGSHSWCKIDAAACWFGRGNEATGPLSIVMYVYTLDLTSSERKMVVEETIKATSMEDLSNSIANQNPRGRGNEEDEDLEEGEIVGDDDLDSSNLSAAIVHQPHPLEHPWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHIIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEVAQASIGKQWKEFLDYNDSIGFIFHEDAKKFDRHAKNRYTV 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5756713 5762022 + CmaCh13G005700.1 Cma13g00570 306397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00570 311 Gene3D RNA Cap, Translation Initiation Factor Eif4e 127 311 IPR023398 -
Cma13g00570 311 SUPERFAMILY eIF4e-like 132 307 IPR023398 -
Cma13g00570 311 MobiDBLite consensus disorder prediction 90 112 - -
Cma13g00570 311 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-1 79 311 - -
Cma13g00570 311 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 79 311 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cma13g00570 311 Pfam Eukaryotic initiation factor 4E 137 289 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cma13g00570 311 ProSitePatterns Eukaryotic initiation factor 4E signature. 192 215 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00570 Cma18g00446 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00570 Cma-Chr13:5756713 Cma17g00145 Cma-Chr17:719790 1.60E-67 dispersed
Cma13g00570 Cma-Chr13:5756713 Cma18g00446 Cma-Chr18:2462683 3.03E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00570 K03259 - csv:101206312 452.21