Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00575 ATGGGTTACCCAGATGAGATGCAGAAGCAGAAGCAGAAGCAGGCAGGTGAAGAACAGTCGCAACCACGAAGAAGTGGTCGAGGGAAGATTGAAATCAAGAGAATTGAAAACACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGTTTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTGGCTCTTATTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAACAACAGTGTTAGGGCTACAATTTCGAGGTACAAAAAGGCATGCTCGGATCCCTATAGCGCCGGATCCGTTTCGGAAGCCAATACACAGTTCTACGAGCAAGAATCCGCCAAATTGCGAGCCGAAATCGGGAATATGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGCAGGTGAAACTGGAGAAGGGAATTAGCCGAATCCGATCAAGAAAGAATGAGGTTCTGTTTGCGGAGATTGAGTACATGCACAAAAGGGAAATCGAACTGTACAACACCAACCAGCTGATACGAGCAAAGATAGCTGAGACAGAGAGAATACAACAAAACAGAAGTGGAAATAACAGCATAGGAGCAAGAGGAGGAGGAGGTGAAGGAGAAGGATGTGTGGGTCCAAATTTAGAGGGTAATCAGCAATATTACTTTCCCCATCAAAATCACCATATCTCCCTGCAACTCATCTAA 747 45.25 MGYPDEMQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPYSAGSVSEANTQFYEQESAKLRAEIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKREIELYNTNQLIRAKIAETERIQQNRSGNNSIGARGGGGEGEGCVGPNLEGNQQYYFPHQNHHISLQLI 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5776852 5780146 - CmaCh13G005750.1 Cma13g00575 306402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00575 248 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 Pfam K-box region 109 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma13g00575 248 SUPERFAMILY SRF-like 26 98 IPR036879 GO:0003677|GO:0046983
Cma13g00575 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 19 237 - -
Cma13g00575 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 237 - -
Cma13g00575 248 CDD MADS_MEF2_like 26 99 IPR033896 GO:0000977|GO:0045944
Cma13g00575 248 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma13g00575 248 Gene3D - 37 103 IPR036879 GO:0003677|GO:0046983
Cma13g00575 248 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 MobiDBLite consensus disorder prediction 10 34 - -
Cma13g00575 248 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Cma13g00575 248 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01355 Cma13g00575 CCT
Cma07g00152 Cma13g00575 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00575 Cma-Chr13:5776852 Cma08g00942 Cma-Chr8:5875347 2.49E-49 dispersed
Cma13g00575 Cma-Chr13:5776852 Cma20g00254 Cma-Chr20:1241469 5.63E-95 wgd
Cma13g00575 Cma-Chr13:5776852 Cma03g01355 Cma-Chr3:8640127 1.72E-91 wgd
Cma13g00575 Cma-Chr13:5776852 Cma07g00152 Cma-Chr7:778548 7.48E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36097 PF01486 K-box 2.60E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00575 K09264 - csv:101205366 340.117