Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00575 | ATGGGTTACCCAGATGAGATGCAGAAGCAGAAGCAGAAGCAGGCAGGTGAAGAACAGTCGCAACCACGAAGAAGTGGTCGAGGGAAGATTGAAATCAAGAGAATTGAAAACACAACAAATCGCCAAGTTACTTTCTGTAAACGCAGAAATGGTTTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTGGCTCTTATTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAACAACAGTGTTAGGGCTACAATTTCGAGGTACAAAAAGGCATGCTCGGATCCCTATAGCGCCGGATCCGTTTCGGAAGCCAATACACAGTTCTACGAGCAAGAATCCGCCAAATTGCGAGCCGAAATCGGGAATATGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGCAGGTGAAACTGGAGAAGGGAATTAGCCGAATCCGATCAAGAAAGAATGAGGTTCTGTTTGCGGAGATTGAGTACATGCACAAAAGGGAAATCGAACTGTACAACACCAACCAGCTGATACGAGCAAAGATAGCTGAGACAGAGAGAATACAACAAAACAGAAGTGGAAATAACAGCATAGGAGCAAGAGGAGGAGGAGGTGAAGGAGAAGGATGTGTGGGTCCAAATTTAGAGGGTAATCAGCAATATTACTTTCCCCATCAAAATCACCATATCTCCCTGCAACTCATCTAA | 747 | 45.25 | MGYPDEMQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPYSAGSVSEANTQFYEQESAKLRAEIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKREIELYNTNQLIRAKIAETERIQQNRSGNNSIGARGGGGEGEGCVGPNLEGNQQYYFPHQNHHISLQLI | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5776852 | 5780146 | - | CmaCh13G005750.1 | Cma13g00575 | 306402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00575 | 248 | ProSiteProfiles | MADS-box domain profile. | 25 | 85 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | PRINTS | MADS domain signature | 27 | 47 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | PRINTS | MADS domain signature | 47 | 62 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | PRINTS | MADS domain signature | 62 | 83 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | Pfam | K-box region | 109 | 195 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma13g00575 | 248 | SUPERFAMILY | SRF-like | 26 | 98 | IPR036879 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN | 19 | 237 | - | - | |
Cma13g00575 | 248 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 19 | 237 | - | - | |
Cma13g00575 | 248 | CDD | MADS_MEF2_like | 26 | 99 | IPR033896 | GO:0000977|GO:0045944 | |
Cma13g00575 | 248 | ProSiteProfiles | K-box domain profile. | 111 | 201 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cma13g00575 | 248 | Gene3D | - | 37 | 103 | IPR036879 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | SMART | madsneu2 | 25 | 84 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 34 | 81 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
Cma13g00575 | 248 | ProSitePatterns | MADS-box domain signature. | 27 | 81 | IPR002100 | GO:0003677|GO:0046983 | |
Cma13g00575 | 248 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01355 | Cma13g00575 | CCT | |
Cma07g00152 | Cma13g00575 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g00575 | Cma-Chr13:5776852 | Cma08g00942 | Cma-Chr8:5875347 | 2.49E-49 | dispersed | |
Cma13g00575 | Cma-Chr13:5776852 | Cma20g00254 | Cma-Chr20:1241469 | 5.63E-95 | wgd | |
Cma13g00575 | Cma-Chr13:5776852 | Cma03g01355 | Cma-Chr3:8640127 | 1.72E-91 | wgd | |
Cma13g00575 | Cma-Chr13:5776852 | Cma07g00152 | Cma-Chr7:778548 | 7.48E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36097 | PF01486 | K-box | 2.60E-24 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00575 | K09264 | - | csv:101205366 | 340.117 |