Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00577 ATGATGGTGCCCAAAAGCTTCTTCGTTTTCATTGTTCTTGTGGTGGATTGCTTCATTTTCTTCAGATTTGCAGATTCCAAGCTCCCACAAGAAGAGGTTGATGCACTACAGCAAATTACGAGAACGCTAGGTGCAGTTTATTGGAAATTCAATAGTGATTCCTGTGCCGTTGAAATGTTCGGGATTACAGAGAAGCCTCCCAGGGGATCTGAGGGTAAAATTGGTTGTGATTGCAACGTCGAGAACAGCACAATTTGTCATGTCGTAAGGATAGAATTCAAACAACACAATCTGCCAGGTGTTCTCCCACGTGAAATAGTCAAACTTCCTTTCCTGAAAGAAGTTGATTTAGCTTACAACTACCTTCATGGTAATATACCTCGGGAGTGGGCTTCAACGCGGTTGACGTCAATCTCTCTTCTTGTCAACCGGTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACTACTCTAACAGAACTGCACCTTGAAGCAAACCAATTTACTGGTGCAATTCCATCACAGCTTGGGAAGTTGAGCAACCTGCAAAGCTTGATGCTATCATCTAATCAATTGGCTGGCACGTTGCCAACAACGTTTGCGGGATTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTCAATGGAACCATACCCGACTTAATACAGAGTTGGACGCAACTCGAAAGATTAGAACTACATGGAAGTGGACTTCAGGGGCCAATTCCTGCAAAAATATCTCTTTTAAGGAACTTAAAAGAATTGAGGATCAGTGATATCAATGGGCCAATGCAGAATTTTCCTGACTTGACGAACATGACGGGCTTGGTTAGATTGGTCCTGAGAAATTGTAACATTGCTGGAGAGATTCCTTCATATGTGTGGATGGCACCAGACTTGCAAATGCTGGACCTCAGCTTTAACCAGTTGACTGGGGAAATTCCAGATGATACAAACATGGAGCGCATGAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGGAAACTACCAGAGTCAATCTTGAAGGATGGATCTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAAACTTTGAATATGAATCTGAACTTGTTCCGAAGTTCTTCCACCGGCAACCCCTTACAGGAAAGTCTCCCCTGCCTGAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCATCAATGCCGGTGGAAACGACTTAACTATGGAGGTAAACAACAAAAGCGTTCTCTACAACGGGGACGCAAATGTTGATGGTGGGACAGCAAAACTCTATACGGATCATGATAGCTACTGGGGGTTGAGTAGTACTGGAGATTTCATGGACGATGATGATTTCCAAAATACGCGCTACACTTTATCACTGCTTTCATCAAATTTGTCTGAGCTATACTCAACAGCGCGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTAGATAATGGAAACTACTTAGTGACGCTTCATTTTGCAGAGCTACAATTTACAAATGATGAGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGAAGAATTTTGATATTGAAGAGGAGGCTGGAGGAGCACAAAAACCAACAGAAAGGGAGTTTGCTAACGTTAGTGTAATTAATCATGTCCTGGAGATCCGACTCTATTGGGCTGGAAAAGGGACGACTAGGATTCCTCAAAGAGGAAGCTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATGTTAAATATTGTTCAATCCATGAAAATGGTAAGACGAAAACTGTAGCCATCGTCATTGGAGTTACGGTTGGAGTATTATGTGTTGCTTCAATCATCATATTGGGACTTCTCCGGTGGAAAAGCACCCTTAGAGCAATCAGGCATAATAAAGGCGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACCCTGAAACAAATAAAAGCTGCAACCAATCATTTTGATTCCTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTGAATTGGTTGATGGTACTATTGTAGCAATTAAGCAGCTATCCTCCAAATCAAGGCAGGGAAACCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGCTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGCATTGAAGGAGATCAACTGTTGTTGGTGTATGAATATCTGGAAAACAATAGTCTTGCCCGAGCACTTTTCGGTCCGTCTTACAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGTTTAGCATATCTCCACGAAGAATCGAGCCTCAAAATCGTTCATAGAGACATCAAAGCTACTAATGTCTTACTCGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGACGATGAGGAGAAGACTCATATCACTACCCGAGTGGCCGGGACCATAGGATATATGGCTCCCGAATATGCACTTTGGGGTTATCTCACCTACAAAGCAGATGTCTATAGTTTCGGAGTCGTGGCGTTGGAAATTATCAGTGGCAGAAGCAACAATGATTATGTACCAAGCGAAACTTGTGTTTGTCTTCTTGACTGGGCCTGTCACTTGCAACAATCTGGTAACCTCATGGAGTTGGTAGATGAGAAGTTGAGATCAGAAATCAACGAAAAACAAGCGGAAAACATGGTGAAAATAGCCCTTCTCTGCACGAATGCTTCGCCGTCGGTAAGGCCAGCGATGTCGGAAGTGGTGAACATGCTGGAAGGAAGAATGGGAATACCAGAGCTAATCCCAGAACCCAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGGGATATGCGTAAACAACAACAGAACCAACAACAACAGAACCAAAGCCTGAGTGAAAGCCAGACCCAAAATTCCACCCAAAATTCCACAATGAGAACATTTGGGTCTTCCTCTACATCTGGAAATGAGTTCTATGATATCAACCCAGAGCCAAGATCATCATCATCAACCTGA 3090 42.14 MMVPKSFFVFIVLVVDCFIFFRFADSKLPQEEVDALQQITRTLGAVYWKFNSDSCAVEMFGITEKPPRGSEGKIGCDCNVENSTICHVVRIEFKQHNLPGVLPREIVKLPFLKEVDLAYNYLHGNIPREWASTRLTSISLLVNRLSGEIPAELGNITTLTELHLEANQFTGAIPSQLGKLSNLQSLMLSSNQLAGTLPTTFAGLKNLTNFRINDNNLNGTIPDLIQSWTQLERLELHGSGLQGPIPAKISLLRNLKELRISDINGPMQNFPDLTNMTGLVRLVLRNCNIAGEIPSYVWMAPDLQMLDLSFNQLTGEIPDDTNMERMRFLFLSGNMLSGKLPESILKDGSNVDLSYNNLTWQGPEQHACRKTLNMNLNLFRSSSTGNPLQESLPCLKDSICSKYSKCWFINAGGNDLTMEVNNKSVLYNGDANVDGGTAKLYTDHDSYWGLSSTGDFMDDDDFQNTRYTLSLLSSNLSELYSTARRSPITLTYFHHCLDNGNYLVTLHFAELQFTNDETYTSLGRRKFDIYIQDRLVLKNFDIEEEAGGAQKPTEREFANVSVINHVLEIRLYWAGKGTTRIPQRGSYGPLISAISVYSDVKYCSIHENGKTKTVAIVIGVTVGVLCVASIIILGLLRWKSTLRAIRHNKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGELVDGTIVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPSYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLRSEINEKQAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMGIPELIPEPSSYNEDLRFKAMRDMRKQQQNQQQQNQSLSESQTQNSTQNSTMRTFGSSSTSGNEFYDINPEPRSSSST 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5785809 5796541 - CmaCh13G005770.1 Cma13g00577 306404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00577 1029 ProSiteProfiles Leucine-rich repeat profile. 302 324 IPR001611 GO:0005515
Cma13g00577 1029 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Cma13g00577 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Cma13g00577 1029 Gene3D Ribonuclease Inhibitor 265 377 IPR032675 -
Cma13g00577 1029 Coils Coil 972 992 - -
Cma13g00577 1029 Gene3D Phosphorylase Kinase; domain 1 640 751 - -
Cma13g00577 1029 Gene3D Ribonuclease Inhibitor 45 197 IPR032675 -
Cma13g00577 1029 Gene3D Ribonuclease Inhibitor 198 264 IPR032675 -
Cma13g00577 1029 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 998 - -
Cma13g00577 1029 Gene3D Transferase(Phosphotransferase) domain 1 752 952 - -
Cma13g00577 1029 SUPERFAMILY L domain-like 77 394 - -
Cma13g00577 1029 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 76 998 - -
Cma13g00577 1029 ProSiteProfiles Protein kinase domain profile. 676 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00577 1029 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672|GO:0006468
Cma13g00577 1029 Gene3D - 404 601 - -
Cma13g00577 1029 MobiDBLite consensus disorder prediction 974 1029 - -
Cma13g00577 1029 SMART serkin_6 676 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00577 1029 SUPERFAMILY Protein kinase-like (PK-like) 660 969 IPR011009 -
Cma13g00577 1029 MobiDBLite consensus disorder prediction 976 1029 - -
Cma13g00577 1029 CDD STKc_IRAK 682 949 - -
Cma13g00577 1029 Pfam Malectin domain 406 594 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00673 Cma-Chr9:3170204 Cma13g00577 Cma-Chr13:5785809 0 dispersed
Cma13g00577 Cma-Chr13:5785809 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma01g01259 Cma-Chr1:9056138 Cma13g00577 Cma-Chr13:5785809 2.57E-07 wgd
Cma13g00577 Cma-Chr13:5785809 Cma18g00439 Cma-Chr18:2418041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69001 PF07714 PK_Tyr_Ser-Thr 2.00E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00577 - - cmax:111495536 2017.28