Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00580 ATGACATCGGGGACGAGAATGCCCACTTGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGACGTGCCATCGCCGCGAAGATCTTTCTCGGCCTGCGAATGTACGGAAACTATAAGCTTCCCAAGCACTGCGATAATAATGAGGTCCTCAAAGCTCTCTGCGTTGAAGCTGGGTGGACTGTAGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCTAGTCCTGCGTCTTCTTCCTTCCCAAGCCCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGCTTCATCACCAGCCTCCTCCAGGCTGCCTCACCATCTTTATATTACTGGTGGCTCCATAAGTGCACCTGTTACCCCTCCGTCGAGCTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGTTTCTCATGTTTGCCTGCATCTACCCCTCCGAGCCCTGGGCGTCAGGTGTTGGCTGATTCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCACCAACCTTCAGCCTTGTGGCTAGGAATCCTTTTGGATTTAAGGAGGCAATGTCTGCTGGAGGTCCTTCATTCGGATTTAAGGAGGCAATGTCAAATCCAATGTCTGCTGGAGGGTCTCGTAATTGGACTCCTACACAGAGCGGGACGTGCTCGCCCACGGTTGCTGCGGGCACCGATCATACTTCAGATGTTCCTATGACGGATGGGACTGCAGCGGAGTTTGCCTTCGAAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACGCGGTGA 1029 52.58 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPSRYAIKGNDNAADPNSLIPWLKNLSSASSPASSRLPHHLYITGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPASTPPSPGRQVLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGPSFGFKEAMSNPMSAGGSRNWTPTQSGTCSPTVAAGTDHTSDVPMTDGTAAEFAFESCSIGLVKPWEGERIHEECISDDLELTLGNSRTR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5806691 5809899 - CmaCh13G005800.1 Cma13g00580 306407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00580 342 MobiDBLite consensus disorder prediction 158 186 - -
Cma13g00580 342 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 342 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cma13g00580 342 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cma13g00580 342 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 342 - -
Cma13g00580 342 MobiDBLite consensus disorder prediction 1 21 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00580 Cma18g00433 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00664 Cma-Chr4:3386282 Cma13g00580 Cma-Chr13:5806691 1.16E-134 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma13g00580 Cma-Chr13:5806691 2.17E-40 dispersed
Cma13g00580 Cma-Chr13:5806691 Cma16g00431 Cma-Chr16:2148810 3.64E-126 dispersed
Cma13g00580 Cma-Chr13:5806691 Cma18g00433 Cma-Chr18:2401598 3.98E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36098 PF05687 BES1_N 5.90E-65 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00580 - - csv:101204637 533.487