Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00580 ATGACATCGGGGACGAGAATGCCCACTTGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGACGTGCCATCGCCGCGAAGATCTTTCTCGGCCTGCGAATGTACGGAAACTATAAGCTTCCCAAGCACTGCGATAATAATGAGGTCCTCAAAGCTCTCTGCGTTGAAGCTGGGTGGACTGTAGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCTAGTCCTGCGTCTTCTTCCTTCCCAAGCCCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGCTTCATCACCAGCCTCCTCCAGGCTGCCTCACCATCTTTATATTACTGGTGGCTCCATAAGTGCACCTGTTACCCCTCCGTCGAGCTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGTTTCTCATGTTTGCCTGCATCTACCCCTCCGAGCCCTGGGCGTCAGGTGTTGGCTGATTCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCACCAACCTTCAGCCTTGTGGCTAGGAATCCTTTTGGATTTAAGGAGGCAATGTCTGCTGGAGGTCCTTCATTCGGATTTAAGGAGGCAATGTCAAATCCAATGTCTGCTGGAGGGTCTCGTAATTGGACTCCTACACAGAGCGGGACGTGCTCGCCCACGGTTGCTGCGGGCACCGATCATACTTCAGATGTTCCTATGACGGATGGGACTGCAGCGGAGTTTGCCTTCGAAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACGCGGTGA 1029 52.58 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPSRYAIKGNDNAADPNSLIPWLKNLSSASSPASSRLPHHLYITGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPASTPPSPGRQVLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGPSFGFKEAMSNPMSAGGSRNWTPTQSGTCSPTVAAGTDHTSDVPMTDGTAAEFAFESCSIGLVKPWEGERIHEECISDDLELTLGNSRTR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5806691 5809899 - CmaCh13G005800.1 Cma13g00580 306407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00580 342 MobiDBLite consensus disorder prediction 158 186 - -
Cma13g00580 342 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 342 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cma13g00580 342 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cma13g00580 342 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 342 - -
Cma13g00580 342 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00580 - - - csv:101204637 533.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00580 Cma18g00433 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00664 Cma-Chr4:3386282 Cma13g00580 Cma-Chr13:5806691 1.16E-134 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma13g00580 Cma-Chr13:5806691 2.17E-40 dispersed
Cma13g00580 Cma-Chr13:5806691 Cma16g00431 Cma-Chr16:2148810 3.64E-126 dispersed
Cma13g00580 Cma-Chr13:5806691 Cma18g00433 Cma-Chr18:2401598 3.98E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G75080 59.2 2.1e-81 300.1
Cma03g00775 CST 632 922 BZR Transcription Factor Family AT1G75080 58.4 1.6e-78 290.4
Cma07g00508 CST 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.6e-78 289.3
Cma05g00226 CST 33 298 BZR Transcription Factor Family AT1G75080 61.6 4.8e-78 288.9
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G19350 57.0 3.6e-78 289.3
Cma03g00775 CST 632 921 BZR Transcription Factor Family AT1G19350 59.2 4.7e-78 288.9
Cma07g00508 CST 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.4e-77 287.3
Cma05g00226 CST 33 299 BZR Transcription Factor Family AT1G19350 60.3 3.1e-77 286.2
Cma03g00775 CST 611 917 BZR Transcription Factor Family AT3G50750 57.9 2.1e-76 283.1
Cma07g00508 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 2.8e-76 282.7
Cma05g00226 CST 1 293 BZR Transcription Factor Family AT3G50750 50.5 6.5e-57 218.4
Cma04g00664 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 2.2e-49 193.0
Cma18g00433 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.4e-48 190.3
Cma16g00431 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 9.2e-48 187.6
Cma04g00664 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.3e-117 420.2
Cma16g00431 . 1 325 BZR Transcription Factor Family AT1G78700 71.0 1.3e-112 403.7
Cma18g00433 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 4.1e-103 372.1
Cma13g00580 CST 1 342 BZR Transcription Factor Family AT1G78700 65.2 2.0e-102 369.8
Cma03g00775 CST 632 804 BZR Transcription Factor Family AT4G36780 78.5 1.2e-63 240.7
Cma07g00508 CST 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.7e-60 229.6
Cma05g00226 CST 33 197 BZR Transcription Factor Family AT4G36780 56.5 7.2e-37 151.8
Cma12g00489 . 57 228 BZR Transcription Factor Family AT4G36780 56.2 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36098 PF05687 BES1_N 5.90E-65 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00580 Cma_Chr13 FPKM 2.830902 2.859818 1.815189 2.239645 6.771886 6.501791 5.686379 0.181745 0.414484 0.530722