Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00580 | ATGACATCGGGGACGAGAATGCCCACTTGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGACGTGCCATCGCCGCGAAGATCTTTCTCGGCCTGCGAATGTACGGAAACTATAAGCTTCCCAAGCACTGCGATAATAATGAGGTCCTCAAAGCTCTCTGCGTTGAAGCTGGGTGGACTGTAGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCTAGTCCTGCGTCTTCTTCCTTCCCAAGCCCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGCTTCATCACCAGCCTCCTCCAGGCTGCCTCACCATCTTTATATTACTGGTGGCTCCATAAGTGCACCTGTTACCCCTCCGTCGAGCTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGTTTCTCATGTTTGCCTGCATCTACCCCTCCGAGCCCTGGGCGTCAGGTGTTGGCTGATTCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCACCAACCTTCAGCCTTGTGGCTAGGAATCCTTTTGGATTTAAGGAGGCAATGTCTGCTGGAGGTCCTTCATTCGGATTTAAGGAGGCAATGTCAAATCCAATGTCTGCTGGAGGGTCTCGTAATTGGACTCCTACACAGAGCGGGACGTGCTCGCCCACGGTTGCTGCGGGCACCGATCATACTTCAGATGTTCCTATGACGGATGGGACTGCAGCGGAGTTTGCCTTCGAAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACGCGGTGA | 1029 | 52.58 | MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPSRYAIKGNDNAADPNSLIPWLKNLSSASSPASSRLPHHLYITGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPASTPPSPGRQVLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGPSFGFKEAMSNPMSAGGSRNWTPTQSGTCSPTVAAGTDHTSDVPMTDGTAAEFAFESCSIGLVKPWEGERIHEECISDDLELTLGNSRTR | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5806691 | 5809899 | - | CmaCh13G005800.1 | Cma13g00580 | 306407 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00580 | 342 | MobiDBLite | consensus disorder prediction | 158 | 186 | - | - | |
Cma13g00580 | 342 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 342 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
Cma13g00580 | 342 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 3 | 139 | IPR008540 | - | |
Cma13g00580 | 342 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 4 | 1 | 342 | - | - | |
Cma13g00580 | 342 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma13g00580 | Cma18g00433 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00664 | Cma-Chr4:3386282 | Cma13g00580 | Cma-Chr13:5806691 | 1.16E-134 | dispersed | |
Cma12g00489 | Cma-Chr12:2541382 | Cma13g00580 | Cma-Chr13:5806691 | 2.17E-40 | dispersed | |
Cma13g00580 | Cma-Chr13:5806691 | Cma16g00431 | Cma-Chr16:2148810 | 3.64E-126 | dispersed | |
Cma13g00580 | Cma-Chr13:5806691 | Cma18g00433 | Cma-Chr18:2401598 | 3.98E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36098 | PF05687 | BES1_N | 5.90E-65 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00580 | - | - | csv:101204637 | 533.487 |