Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00582 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGGAGAAGGAGATCGCCGTCCTTGGAGGTATTTTTGGCCCCTGTTGACCTCTCCGATGTGGCCTTAGTTCGAACCCTGGCGATAGTTGCGATGGAGCTCGTTTCCCGATTTTCACAGAAATTTTTCTTCTTTCAGCGGAGGAATTCGCGATCTCTGATAAGGAAACTGGAGGTGTGTTTAGTCTTTTTGGACTGTTTGAAGGATTCCGGTGCTACTTTGCCTCACACGGCGTTGCTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCGAAGATACTCCTTGATTATTGCTCCGAATCGAGTAAGTTATGGATGTTGCTTCAGAACCACTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTTTTGAGGAAGTTGAATTAGCTGTGGATGTTAAAGAACAGGTTGAGCTCTTGCAAAAGCAATTGAGAAGGACTAGGATGTTTGTTGATGAATGCGATGAGGTGTCGAGGGTGCGCTTCCTTTCGTTTCTCGATGAATTTGAGAATGGGAGGCTTCCGAATCCGAGGGAATTGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAATGCTAAGTGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCAACCTTAGCAGTGTTAAATGGTTTTGTTGCTTTTACTAGATATAGTAGATTTCTCCTCTTCGGATTTGAGGAAGATGAAGTTGATTCAGGTGCAGGAAACCAGAAGAAGCTGAAGAAGAACTTGATTAGCCAGGAGATTGCTGAGACGCTTTTAACGATTCCGAGGGACTTCTGCTGCCCGATATCACTGGATTTGATGAACGATCCGGTGATCATTTCTACAGGTCAGACATACGACCGCAGTTCGATTACTAGATGGATGGAAGAAGGGCACAGCACTTGCCCAAAGACGGGGCAATTGCTCGTTCATACCCGCCTCGCTCCCAACCGCGCGTTAAGGAATTTGATCATCCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGAATGGATGCATCTGCTGAAAGTTATGCAATGGCCTCTCCCACACGTGCTGCGCTTGAAGCCAACAGAGCAACAGCTATAATCCTTATTCAACAGTTATCAATCGGATCGCAAGATGCAAAGTCGATTGCTGCTCGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAATCGTGCGTTCATCGCAGAAGCCGGTGCAATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCAGTGACTGCTATGCTTAATCTCTCAATATATGACAGGAACAAGAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAACCGAAGTGTTGAGATCTGGGCATAGTACAGAAGCACGGGAAAACGCTGCAGCTACGTTGTTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGAGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGACGCTGTAACAGCTTTGTTTAATCTCTCAACGCATACCGATAACTGCGTTCAGATGATAGAGGCCGGAGCAGTAACAGCGCTTGTAGGAGCATTGGGGAACGAAGGTGTTTTTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGAGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTAATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGAGGCGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGGTTGCTCCAAATGCTCCTATTTACTGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTCGAGTGTTCCAAAGATGTGAGCATGTTGTAATGCATGGGGTTGGTTATGCCTATCCAAGTAACTCGGCTTCTAACAGGGACTCCAGCTTTGCTAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCGGTCGTGTAG 2136 47.28 MAAAAIFSSLRRRRSPSLEVFLAPVDLSDVALVRTLAIVAMELVSRFSQKFFFFQRRNSRSLIRKLEVCLVFLDCLKDSGATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWMLLQNHSISGHFNDLNLELLTFFDVFPFEEVELAVDVKEQVELLQKQLRRTRMFVDECDEVSRVRFLSFLDEFENGRLPNPRELREFFVDKLKIRNAKCCRAEIEFLEEQIVNHEGDVEPTLAVLNGFVAFTRYSRFLLFGFEEDEVDSGAGNQKKLKKNLISQEIAETLLTIPRDFCCPISLDLMNDPVIISTGQTYDRSSITRWMEEGHSTCPKTGQLLVHTRLAPNRALRNLIIQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATAIILIQQLSIGSQDAKSIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDRNKSLIMSEVGCLGSITEVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEESGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIEAGAVTALVGALGNEGVFEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEHVVMHGVGYAYPSNSASNRDSSFASEVSVPISISVPVV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5819182 5821317 - CmaCh13G005820.1 Cma13g00582 306409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00582 711 SMART arm_5 587 627 IPR000225 GO:0005515
Cma13g00582 711 SMART arm_5 421 461 IPR000225 GO:0005515
Cma13g00582 711 SMART arm_5 506 546 IPR000225 GO:0005515
Cma13g00582 711 SMART arm_5 547 585 IPR000225 GO:0005515
Cma13g00582 711 SMART arm_5 463 504 IPR000225 GO:0005515
Cma13g00582 711 Gene3D - 513 667 IPR011989 -
Cma13g00582 711 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Cma13g00582 711 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Cma13g00582 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Cma13g00582 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cma13g00582 711 PANTHER U BOX DOMAIN-CONTAINING 11 688 - -
Cma13g00582 711 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Cma13g00582 711 Coils Coil 212 232 - -
Cma13g00582 711 CDD RING-Ubox_PUB 292 334 IPR045210 -
Cma13g00582 711 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 688 - -
Cma13g00582 711 SUPERFAMILY RING/U-box 277 362 - -
Cma13g00582 711 Gene3D - 382 512 IPR011989 -
Cma13g00582 711 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Cma13g00582 711 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Cma13g00582 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00582 Cma18g00432 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00299 Cma-Chr3:3878905 Cma13g00582 Cma-Chr13:5819182 7.76E-128 dispersed
Cma07g01227 Cma-Chr7:6758599 Cma13g00582 Cma-Chr13:5819182 9.13E-134 dispersed
Cma13g00582 Cma-Chr13:5819182 Cma15g00141 Cma-Chr15:669912 1.48E-129 dispersed
Cma13g00582 Cma-Chr13:5819182 Cma18g00432 Cma-Chr18:2389946 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00582 - - csv:101204151 1196.42