Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00585 ATGGACGATGTTACCTTCAACAATAACCACCAATTCTATTCTGTTGATCTCTTAGAAGATAGCGACGAATTCAAGGCAGCCCCTGATTCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCTCCTAATTCCACCGCCGCCGCCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGCGGATTAATGGCGACGGCCCAAGGAATTCCTCTGGTTCTACGACTCCACCTTCTGATTCTTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAGGGCTCCCCTTATCCCAGGGCGTATTATAGGTGTAGTAGCTCCAAGGGATGTCCGGCGAGGAAGCAAGTAGAGAGGAACCGGCTTGATCCCACCATGTTGCTCATTACTTATTCCTGCGAGCACAACCATTCCGGTCCGGTTTCCAGAAACAACAATCACCACCAAGCCGCCGCCGTGAAACCCACTTCGCCAGAGACTGTTCCGGTTCATCCAGAACCGGAACCGGAGGCGGAAGAGAAATTTGTGGAGTCGTTAGAGGACCAGTTCAGCTGGTTTGGGGAAATGGAAACCACGTCGTCCACAGTGCTCGAAAGCTCCATTTTCTCGGGGAGATCATCGAGCGGAGTGGGAGATTCGATTTCCAGTGACGTGGCAATGCCTTTTCCGATGGGGGATGATGACGTGGACGACTCTCTCTTTGCGGATCTCGGGGAGTTGCCGGAGTGCTCTGTCGTGTTCCGACACGGCGGAGGCCCGGGATTACCGGTCGATGAACAACCGGCTACAAGCCAGCGGCGGATCACTCCTTGGTGCGGAGCCACCACTTGA 828 54.71 MDDVTFNNNHQFYSVDLLEDSDEFKAAPDSPPPPPPPPLPPNSTAAAKKGRRGMKKKVVSVRINGDGPRNSSGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNHHQAAAVKPTSPETVPVHPEPEPEAEEKFVESLEDQFSWFGEMETTSSTVLESSIFSGRSSSGVGDSISSDVAMPFPMGDDDVDDSLFADLGELPECSVVFRHGGGPGLPVDEQPATSQRRITPWCGATT 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5832711 5834151 - CmaCh13G005850.1 Cma13g00585 306412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00585 275 Gene3D WRKY domain 68 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00585 275 MobiDBLite consensus disorder prediction 27 43 - -
Cma13g00585 275 MobiDBLite consensus disorder prediction 17 86 - -
Cma13g00585 275 MobiDBLite consensus disorder prediction 65 82 - -
Cma13g00585 275 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 42 273 IPR044810 GO:0003700
Cma13g00585 275 MobiDBLite consensus disorder prediction 138 171 - -
Cma13g00585 275 Pfam WRKY DNA -binding domain 80 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00585 275 SMART WRKY_cls 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00585 275 PANTHER OS01G0750100 PROTEIN 42 273 - -
Cma13g00585 275 MobiDBLite consensus disorder prediction 250 275 - -
Cma13g00585 275 SUPERFAMILY WRKY DNA-binding domain 75 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00585 275 ProSiteProfiles WRKY domain profile. 79 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00585 275 MobiDBLite consensus disorder prediction 138 152 - -
Cma13g00585 275 MobiDBLite consensus disorder prediction 261 275 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00585 Cma18g00429 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01903 Cma-Chr11:12604487 Cma13g00585 Cma-Chr13:5832711 3.59E-45 dispersed
Cma13g00585 Cma-Chr13:5832711 Cma18g00530 Cma-Chr18:3291663 1.67E-34 dispersed
Cma13g00585 Cma-Chr13:5832711 Cma18g00429 Cma-Chr18:2364208 3.96E-110 wgd
Cma13g00585 Cma-Chr13:5832711 Cma19g01009 Cma-Chr19:8683559 4.69E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36100 PF03106 WRKY 8.00E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00585 - - csv:101203902 382.874