Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00589 ATGCCGCATCGCTGCTCAGCGAAAAACATACCAGTAGGGGAGGCTGTCACTCACTCTTCTCCGAAAAGTTGCCCTTTAGATTCAACCCCAACAGCTCTCATCTTCTCCATGGCTATTCAACGTAGCCAAGTTTTGATTTTTCCCGCCAACAGTTTTCTTTACAATGATCATTTCATGGGTCTTGTTCGAAAGAAGAAGATCCAAATTCCATTCAAATCAAGGACGTACTCTGCCCAACAAAATTGTTGCTTACACTTCCCGCAAAATTCAAATCTGTTTCTGCACACACTTTGCTTCTCATCTCTTCTTCCTCTCTGTGCAGATGGGGTTGCAGAATCACGGGTATCGGAAGAAAGGGCAATGATGGTTTCTGATATTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGTGTTGATGCCAATGGAGAGGCATTCGTTGCCTGCCATGAGTGCCATTTTCCTATTTGCAGAGTCTGCGTTCAGTATGATATTAAGGAAGGCAGAAATGTTTGCTTACGTTGTGGGTCTCCATTTGACGTGGTTCTGAATTTGCTTGCATGTCCTGAATTTTCAGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATGAAAACACAATGGCATCTCATCTCAGTCACTCACAGGACGTTGGAGTTCATGCTAGACATATCAGCAGTGTGTCAACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAAAGGCCTACCGTGAAGGCTGAACAGGAAGCTCAAATTCCTCCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGCGGCTGCGGTTACACACACATTTTCTTCAGTTTATCCAATTCCATCCAGCAGATTAACACCATACAGAATTGTGATAATCATGAGATTGATCATTCTAGCTCTTTTCTTCCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTTACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTCTCCCGTCTGCAGAGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCATTGAAAGAACCTCCATTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTTGTCGAGACAGCCGACTTTGCAAGAAAGTGGGTTCCATTCTGCAAGAAATTTTCTATTGAACCTCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTTCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGCAATACTGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCCGGCGCTGAAAATGCTCTGGTAAGAGTATCTGCAGTCCTCACAAACGCCCCCTTCATTCTCAATCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATGTATGCTACGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCAAATCGCAACACAGTTTTCTTTGATGTCAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTACGTGGGTACAGGTTGTGTTTTTTATAGACAGGCTCTTTATGGCTACGGACCTCCTACTATGCCTAGCTTATCTAAGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGTTGTCCTTCCAAGAAGATCTCAAAAGATCCAACTGAGATTCAGAGAGATGTGAAAAGAGAAGAGCTAGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGTTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCGACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATTCATCGATTTTGATCAAAGAAGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCCATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTTGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATTAACACCATTGTCTATCCCTTCACTTCCCTCCCTCTCGTTGCGTACTGCTCATTGCCTGCAATCTGCCTGCTGACTGGAAAATTTATCATACCAACGCTCTCAAACCTAGCAAGTACTCTTTTTCTGGGCCTCTTCTTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATCTATGGCGTAATGAGCAATTCTGGGTCATCGGAGGCGTCTCGGCCCATCTCTTTGCTGTTTTCCAAGGATTTTTAAAGATGTTAGCTGGTGTGGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACGCCGAGTTTGGAGAGCTATACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATTGTTGTTAACATGGTCGGTGTCGTTGCTGGATTTTCCGATGCACTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTCGGCAAGGTATTCTTTGCCTTCTGGGTTATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTGTGGTCTGTACTGTTGGCATCAGTTTTCTCACTCGTCTGGGTGAAGATAAACCCATTTGTGAACCAAATTGACAGCACAACCATTGCACAAAGCTGCATTGCCATAGATTGTTGA 3309 43.82 MPHRCSAKNIPVGEAVTHSSPKSCPLDSTPTALIFSMAIQRSQVLIFPANSFLYNDHFMGLVRKKKIQIPFKSRTYSAQQNCCLHFPQNSNLFLHTLCFSSLLPLCADGVAESRVSEERAMMVSDIPICHTCGEPVGVDANGEAFVACHECHFPICRVCVQYDIKEGRNVCLRCGSPFDVVLNLLACPEFSENLLMDADTKRSGDENTMASHLSHSQDVGVHARHISSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKAEQEAQIPPQQQMEEKQISEAAAVTHTFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKRAYEEFKVRVNALVAKAQKTPDEGWFMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFYRQALYGYGPPTMPSLSKTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDVKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANSSILIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQIDSTTIAQSCIAIDC 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5847747 5855406 + CmaCh13G005890.1 Cma13g00589 306416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00589 1102 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 526 667 IPR029044 -
Cma13g00589 1102 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 122 1102 - -
Cma13g00589 1102 SUPERFAMILY RING/U-box 118 185 - -
Cma13g00589 1102 MobiDBLite consensus disorder prediction 251 278 - -
Cma13g00589 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 207 IPR013083 -
Cma13g00589 1102 Pfam Cellulose synthase 387 1093 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma13g00589 1102 Pfam Zinc-binding RING-finger 126 178 IPR027934 -
Cma13g00589 1102 SUPERFAMILY Nucleotide-diphospho-sugar transferases 401 895 IPR029044 -
Cma13g00589 1102 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 122 1102 - -
Cma13g00589 1102 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 671 700 IPR017896 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00589 Cma18g00426 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00589 Cma-Chr13:5847747 Cma17g01379 Cma-Chr17:9205889 0 dispersed
Cma13g00589 Cma-Chr13:5847747 Cma18g00426 Cma-Chr18:2331917 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00589 K10999 - csv:101208988 1873.21