Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00599 ATGGAGAAAAAGAGTTCCATTTTAATGCAAAGGTACGAGCTTGGGAGGATGCTTGGGCAGGGCACTTTTGCCAAAGTCTACCATGCTCGTAACCTTAAGTCAGGCCAGAGCGTGGCCATCAAGGTCATTAATAAAGAGAAAGTGATGCGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTGATGCGCCTAGTCCGCCATCCCAATGTAGTGCAGCTTTACGAGGTTATGGCTAGCCGGACCAAGATCTATTTTGCCATGGAGTATGTCAAAGGTGGGGAGCTTTTCGATAAGGTGGCTGAAGGCAAGCTCAAGGAAGACGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGCGCTGTTGATTATTGCCATAGCCGTGGCGTCTACCATAGAGATATCAAGCCTGAAAATCTCCTCCTCGATGAGTTTGGGAATCTCAAGATTTCCGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGGCGGCAAGATGGACTTCTTCATACCACTTGCGGCACTCCTGCCTATGTCGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGAGCTAAAGCTGACATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTGGCGGGTTATCTCCCTTTCCACGACCCAAATCTAATGGAAATGTACAGAAAAATCTCGAGAGGAGAATTCAAATGCCCTCACTGGTTTCCCCCAGAAGTTCGCAAGCTGCTCTCAAGAATCCTAGACCCAAATCCACAAACCAGAATAAAAATGGCCAAACTAATGGACAATTCATGGTTCAAAAAGGGTTTCAGCGCAAATGTAGCAACTCCAAAGCCGCTTCAAATTAATCGAAGCATGTCGGGTGTGAGCGACGTCCACATCGATTTCGACGACAGCAGCTCGGAGGAAGGCTCTGTTAGTACCAGCAACGAGAGTGGACCACCACCAGCAGGCAGAACCCCAAGGAGAAACCATTCCTTCAATGCATTCGACATCATATCTCTGTCGCCAGGTTTTGATCTGTCGGGTCTGTTCGAGAGCGACGTGAACGATAGGCCGCAGTCGCGTTTCACGACAACGAAGCCAGAGTCGGCGATCGTGTCGAAGTTTGAAGAGATAGCAGAAATGGAAAGGTTCAAGGTGATGAAGAAAGATGGGTTAGTGAAACTGCAGGGGAGCAAACAGGGGAGAAAAGGACAATTGGCTATAGACGCAGAGATATTTGAAGTGACGCCTTCGTTTTTTGTGGTGGAGGTGACGAAAACAGCAGGGGACACATTGGAGTACAGGAAATTTTACGACAAAGACATGAGGCCTTGCCTTAAGGACATTGTGTGGACTTGGGAAGGAAATGAACAACCAACCACATAA 1371 47.7 MEKKSSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKVINKEKVMRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFDKVAEGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPHWFPPEVRKLLSRILDPNPQTRIKMAKLMDNSWFKKGFSANVATPKPLQINRSMSGVSDVHIDFDDSSSEEGSVSTSNESGPPPAGRTPRRNHSFNAFDIISLSPGFDLSGLFESDVNDRPQSRFTTTKPESAIVSKFEEIAEMERFKVMKKDGLVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVTKTAGDTLEYRKFYDKDMRPCLKDIVWTWEGNEQPTT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5887321 5888902 - CmaCh13G005990.1 Cma13g00599 306426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00599 456 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Cma13g00599 456 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00599 456 MobiDBLite consensus disorder prediction 301 315 - -
Cma13g00599 456 Pfam NAF domain 326 383 IPR004041 GO:0007165
Cma13g00599 456 SUPERFAMILY Protein kinase-like (PK-like) 8 334 IPR011009 -
Cma13g00599 456 MobiDBLite consensus disorder prediction 293 324 - -
Cma13g00599 456 PANTHER - 2 454 - -
Cma13g00599 456 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00599 456 Gene3D Kinase associated domain 1, KA1 322 447 - -
Cma13g00599 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cma13g00599 456 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00599 456 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Cma13g00599 456 CDD CIPK_C 328 442 - -
Cma13g00599 456 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cma13g00599 456 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 454 - -
Cma13g00599 456 CDD STKc_SnRK3 11 265 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00599 Cma18g00420 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00414 Cma-Chr9:1766505 Cma13g00599 Cma-Chr13:5887321 2.44E-177 dispersed
Cma10g00478 Cma-Chr10:2169579 Cma13g00599 Cma-Chr13:5887321 0 dispersed
Cma11g00469 Cma-Chr11:2275952 Cma13g00599 Cma-Chr13:5887321 0 dispersed
Cma03g00303 Cma-Chr3:3915626 Cma13g00599 Cma-Chr13:5887321 0 transposed
Cma07g01230 Cma-Chr7:6791652 Cma13g00599 Cma-Chr13:5887321 0 transposed
Cma13g00599 Cma-Chr13:5887321 Cma18g00420 Cma-Chr18:2300342 0 wgd
Cma13g00599 Cma-Chr13:5887321 Cma03g01326 Cma-Chr3:8539246 3.55E-180 wgd
Cma13g00599 Cma-Chr13:5887321 Cma07g00182 Cma-Chr7:871594 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69003 PF00069 Pkinase 5.50E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00599 K07198 - csv:101206082 803.897