Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00606 ATGATGATGGCAGAGAGAAAGAAGAACGATGAAGATCAGGAGGGAGGAATTAAGCTGTTTGGGGCCACTATTATGTTGCATAACAACCGGATACTTAAAGAAGAGCCCAACGATTCAGATCAACAATCGCCAGAAAAAAGGCCTGACAAGATCATCCCCTGTCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCACGCCATTTCTGTAAGGGCTGCCAGAGGTACTGGACCGCCGGTGGGGCCCTCCGTAATGTCCCTGTTGGAGCCGGCCGCCGAAAAACCAAACCCCCTTGCCAGACCTTTGGTGGGTTGCCGGAAAATTGCGTCTTTGATTCTTCAGGGATCGTGGCGGTGCAGCCGTTTGAGTTGGAAGGGATGGTTGAGGAGTGGCATGTCGTCGCTGCAGCTGCACATGATGGGTTCCGGCAAATTTTACCGAATTTCGATGTGATTGAGGGGGAAAAATGGAAAAAGAAACGTGTTTTGATGAACTCATATTGGTTCCCCAATTTTGATAACGAGGAACCGATCTTCACCATAACCAAAGAGAATCAATGTTTCAGTTCTTATAGGAAGTGA 609 46.47 MMMAERKKNDEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSPEKRPDKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAAAAHDGFRQILPNFDVIEGEKWKKKRVLMNSYWFPNFDNEEPIFTITKENQCFSSYRK 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5932833 5933739 + CmaCh13G006060.1 Cma13g00606 306433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00606 202 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Cma13g00606 202 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Cma13g00606 202 MobiDBLite consensus disorder prediction 33 52 - -
Cma13g00606 202 PANTHER CYCLIC DOF FACTOR 2 13 156 IPR045174 GO:0003700|GO:0006355
Cma13g00606 202 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 13 156 - -
Cma13g00606 202 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00189 Cma13g00606 CCT
Cma03g01320 Cma13g00606 CCT
Cma13g00606 Cma18g00411 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00606 Cma-Chr13:5932833 Cma06g00906 Cma-Chr6:5905152 2.11E-37 dispersed
Cma13g00606 Cma-Chr13:5932833 Cma18g00411 Cma-Chr18:2242124 4.20E-77 wgd
Cma13g00606 Cma-Chr13:5932833 Cma03g01320 Cma-Chr3:8520805 2.11E-51 wgd
Cma13g00606 Cma-Chr13:5932833 Cma07g00189 Cma-Chr7:896540 4.33E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36102 PF02701 zf-Dof 6.00E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00606 - - csv:101204978 266.159