Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00606 | ATGATGATGGCAGAGAGAAAGAAGAACGATGAAGATCAGGAGGGAGGAATTAAGCTGTTTGGGGCCACTATTATGTTGCATAACAACCGGATACTTAAAGAAGAGCCCAACGATTCAGATCAACAATCGCCAGAAAAAAGGCCTGACAAGATCATCCCCTGTCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCACGCCATTTCTGTAAGGGCTGCCAGAGGTACTGGACCGCCGGTGGGGCCCTCCGTAATGTCCCTGTTGGAGCCGGCCGCCGAAAAACCAAACCCCCTTGCCAGACCTTTGGTGGGTTGCCGGAAAATTGCGTCTTTGATTCTTCAGGGATCGTGGCGGTGCAGCCGTTTGAGTTGGAAGGGATGGTTGAGGAGTGGCATGTCGTCGCTGCAGCTGCACATGATGGGTTCCGGCAAATTTTACCGAATTTCGATGTGATTGAGGGGGAAAAATGGAAAAAGAAACGTGTTTTGATGAACTCATATTGGTTCCCCAATTTTGATAACGAGGAACCGATCTTCACCATAACCAAAGAGAATCAATGTTTCAGTTCTTATAGGAAGTGA | 609 | 46.47 | MMMAERKKNDEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSPEKRPDKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAAAAHDGFRQILPNFDVIEGEKWKKKRVLMNSYWFPNFDNEEPIFTITKENQCFSSYRK | 202 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5932833 | 5933739 | + | CmaCh13G006060.1 | Cma13g00606 | 306433 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00606 | 202 | Pfam | Dof domain, zinc finger | 50 | 105 | IPR003851 | GO:0003677|GO:0006355 | |
Cma13g00606 | 202 | ProSitePatterns | Zinc finger Dof-type signature. | 54 | 90 | IPR003851 | GO:0003677|GO:0006355 | |
Cma13g00606 | 202 | MobiDBLite | consensus disorder prediction | 33 | 52 | - | - | |
Cma13g00606 | 202 | PANTHER | CYCLIC DOF FACTOR 2 | 13 | 156 | IPR045174 | GO:0003700|GO:0006355 | |
Cma13g00606 | 202 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 13 | 156 | - | - | |
Cma13g00606 | 202 | ProSiteProfiles | Zinc finger Dof-type profile. | 52 | 106 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma07g00189 | Cma13g00606 | CCT | |
Cma03g01320 | Cma13g00606 | CCT | |
Cma13g00606 | Cma18g00411 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g00606 | Cma-Chr13:5932833 | Cma06g00906 | Cma-Chr6:5905152 | 2.11E-37 | dispersed | |
Cma13g00606 | Cma-Chr13:5932833 | Cma18g00411 | Cma-Chr18:2242124 | 4.20E-77 | wgd | |
Cma13g00606 | Cma-Chr13:5932833 | Cma03g01320 | Cma-Chr3:8520805 | 2.11E-51 | wgd | |
Cma13g00606 | Cma-Chr13:5932833 | Cma07g00189 | Cma-Chr7:896540 | 4.33E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36102 | PF02701 | zf-Dof | 6.00E-32 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00606 | - | - | csv:101204978 | 266.159 |