Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00622 ATGCTTCTCCTCTTCTTCTTCACCTTCCTCTCAAACCCTTCTCTCCTCTCCCTCTCTCTAACCCAAGAAGGCCTTTACCTCCACACCATCAAGCTCTCCCTCGACGACCCAGATTCCTCCCTCCGTTCATGGAACGACCGCGACCACACTCCCTGCTCCTGGTTCGGCGTCTCTTGCGACCCTCAAACCAACTCCGTCCACTCCCTCGACCTCTCCAACACCAACATCGCCGGCCCATTCCCTGCCCTCCTCTGCCGCCTCCAGAATCTCTCATTCCTTTCCCTCTACAACAACTCCATCAACATGTCCCTTCCCTCTCTTATTTCAGATTGTTCCAGTCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTGCCGAGTTCGATCGCCGATCTCCCCAACCTTCGCTATTTGGATTTGACTGGGAATAACTTCTCCGGAGATGTTCCGCCCAGTTTCGCTCGGTTTCGGAAGTTGGAGGTTTTGTCTCTTGTTTACAATCTTCTCGATGGACCCATGCCGGCGTTTCTCGGTAATATTACGTCGTTGAAGATGTTGAACCTGTCTTACAACCCGTTTGCGCCGAGTCGGATCCCGCTGGAGTTTGGGAATTTGACGAATCTTGAGGTGCTTTGGCTGACTCAGTGTAATTTGATTGGGGAAATTCCGAACTCTCTTGGTCGGTTGAAGCGGCTTACTGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCGATTCCGAGGTCGCTTACGGATTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACGGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACCTCACTGCGACTGTTTGACGCGTCGATGAACGGTTTGACTGGGTCGATACCGGATGAGCTGTGTCAGCTGCCGCTTGAGAGTCTTAATCTCTACGAGAACAAGTTTGAGGGGAAGTTACCGGAAAGCATTGCCAACTCGCCGGGTTTGTACGAACTCAGGCTGTTCAGAAACCGTCTCACTGGCGGTTTGCCGCCAAATCTTGGAAATAACTCGCCATTGAGATGGATTGATGTTTCTAACAACCAGTTTTCGGGTGAAATCCCGGGGGATTTGTGTGAGAAGGGAGCGTTGGAGGAACTTCTGATGATTAACAACCAGTTTTCCGGGGAGATCCCGGCGAGTTTAAGTGAGTGTAAAAGTCTCACGAGGGTTCGATTGGGTTACAATCGATTTTCCGGCGAGGTGCCGGCGGGTTTTTGGGGGCTCCCACATGTGTATTTGTTGGAGCTGGTGAGTAACTCATTTTCTGGGAATATTTCGGATGCCATAGCCACTGCGAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACATTACCGGCGGAGATGGGACGGCTGGATAATCTTGTGAAGTTGCTAGCGACTGAAAACAAACTCAGTGGGTCATTACCGGGGAGTCTTGTGAATCTTGGGCATCTTTCGAGCTTGGATCTTCGAAGTAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAGTCGTGGAAGAATCTCAACGAACTCAGTTTGGCAAACAATGGATTCACCGGCGAAATCCCTGAAGAAATCGGGGACTTGCCGGTTCTCAATTACCTTGATCTGTCGGGAAACATGTTTTCTGGGAACATCCCTGTCGGACTACAGAATTTGAAGCTCAATCTGCTCAATTTATCGAACAATCACTTGTCAGGTGAGCTTCCCCCATTTTTAGCTAAGGAGATCTACAGAAATAGCTTTTTAGGGAATCCAGATTTGTGTGGACATTTGGGAAGTTATTGCAACAGCAAAGGTGAAGAAGCTAAAAGCGTAGGCTCTCTCTGGTTGTTGCTATCGATCTTCTTCCTCGCCGGTATCGTGTTTATCATCGGCGTCGTCTGGTTTTACCTCAAATACAGGAAGTTTAAGGCGGCGAAGAGAGAAATGGAGAAGGGGAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTAGATTGTCTGGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAGGTTGTGCTCAACAATGGCGAGGCCATTGCTGTTAAGAAGCTGTTCGGCGGGACAAGGAAAGAGGGCGAAAAAGGCGACGATGTCGAGAAGGGTCAAGTTCTTCAAGACTATGGATTCGAAGCCGAAATCAATACTCTGGGAAAGATTAGGCACAAGAACATTGTGAAGTTGTGGTGCTGCTGCGTTACAAGAGACTACAAGCTTTTGGTCTATGAATATATGGCTAATGGAAGCTTGGGAGATTTGCTTCATAGCAGTAAAAAAGGAGTGCTTGATTGGCCTACCAGGTTTAAGATAGCTTTGGATGCTGCAAAAGGACTCTCTTATCTTCATCACGATTGCACCCCTCCAATCTTTCATCGAGACGTTAAGTCGAACAACATCTTGTTGGATAGCGATTTTGGAGCACGGTTAGCCGATTTCGGCGTGGCTAAGGTCATCGATTCAACTGCGAAAGGGCCTAAATCCATGTCGGTAATCGCAGGATCTTGCGGTTATATTGCGCCTGAGTATGCTTACACACTCCGTGTGAATGAAAAGAGCGACATATACAGCTTCGGCGTGGTGATCCTGGAGCTAATAACCGGGAGGCTCCCGATCGATCCAGTGTTCGGGGAGAAAGACCTGGTGAAATGGGTGTGTTCCACATTGGATCAAGACGGGATCGACAAGGTGATAAACCCGAAACTGGATAGGTGTTTCAAGGAAGAAATATGCAGAGTGCTGAACATTGGGCTGCTATGCACCAGCCCTCTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGGAAGAAGTTGGGGCAGAGAACCAATTGAAAACCAACAATAAAGATGGGAAGCTAACTCCTTACTATTACGAAGATTCCTCGGATCAGGGAAGTGTAGCGTAG 2994 48.0 MLLLFFFTFLSNPSLLSLSLTQEGLYLHTIKLSLDDPDSSLRSWNDRDHTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPALLCRLQNLSFLSLYNNSINMSLPSLISDCSSLQHLDLSQNLLTGALPSSIADLPNLRYLDLTGNNFSGDVPPSFARFRKLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFAPSRIPLEFGNLTNLEVLWLTQCNLIGEIPNSLGRLKRLTDLDLALNNLYGPIPRSLTDLSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGSIPDELCQLPLESLNLYENKFEGKLPESIANSPGLYELRLFRNRLTGGLPPNLGNNSPLRWIDVSNNQFSGEIPGDLCEKGALEELLMINNQFSGEIPASLSECKSLTRVRLGYNRFSGEVPAGFWGLPHVYLLELVSNSFSGNISDAIATAKNLSIFIISKNNFTGTLPAEMGRLDNLVKLLATENKLSGSLPGSLVNLGHLSSLDLRSNELSGELPSGIKSWKNLNELSLANNGFTGEIPEEIGDLPVLNYLDLSGNMFSGNIPVGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHLGSYCNSKGEEAKSVGSLWLLLSIFFLAGIVFIIGVVWFYLKYRKFKAAKREMEKGKWTLMSFHKLDFSEYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAIAVKKLFGGTRKEGEKGDDVEKGQVLQDYGFEAEINTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMANGSLGDLLHSSKKGVLDWPTRFKIALDAAKGLSYLHHDCTPPIFHRDVKSNNILLDSDFGARLADFGVAKVIDSTAKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPVFGEKDLVKWVCSTLDQDGIDKVINPKLDRCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLEEVGAENQLKTNNKDGKLTPYYYEDSSDQGSVA 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5990548 5994272 - CmaCh13G006220.1 Cma13g00622 306449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00622 997 Gene3D Phosphorylase Kinase; domain 1 648 771 - -
Cma13g00622 997 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 977 - -
Cma13g00622 997 Gene3D Ribonuclease Inhibitor 20 175 IPR032675 -
Cma13g00622 997 Gene3D Ribonuclease Inhibitor 176 276 IPR032675 -
Cma13g00622 997 SUPERFAMILY Protein kinase-like (PK-like) 674 965 IPR011009 -
Cma13g00622 997 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Cma13g00622 997 Pfam Protein kinase domain 684 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00622 997 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Cma13g00622 997 SMART serkin_6 682 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00622 997 Gene3D Transferase(Phosphotransferase) domain 1 772 991 - -
Cma13g00622 997 ProSiteProfiles Protein kinase domain profile. 682 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00622 997 Pfam Leucine Rich Repeat 210 231 IPR001611 GO:0005515
Cma13g00622 997 SUPERFAMILY RNI-like 68 414 - -
Cma13g00622 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Cma13g00622 997 Gene3D Ribonuclease Inhibitor 306 614 IPR032675 -
Cma13g00622 997 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Cma13g00622 997 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 5 977 - -
Cma13g00622 997 SUPERFAMILY L domain-like 378 599 - -
Cma13g00622 997 SMART LRR_typ_2 208 232 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 87 111 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 280 304 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 135 158 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 183 207 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 543 566 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 495 518 IPR003591 -
Cma13g00622 997 SMART LRR_typ_2 112 134 IPR003591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01291 Cma13g00622 CCT
Cma13g00622 Cma18g00392 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00611 Cma-Chr9:2889430 Cma13g00622 Cma-Chr13:5990548 0 dispersed
Cma10g00669 Cma-Chr10:3044952 Cma13g00622 Cma-Chr13:5990548 0 dispersed
Cma12g00237 Cma-Chr12:1182722 Cma13g00622 Cma-Chr13:5990548 0 dispersed
Cma13g00622 Cma-Chr13:5990548 Cma19g00514 Cma-Chr19:6033034 0 dispersed
Cma04g00851 Cma-Chr4:4368041 Cma13g00622 Cma-Chr13:5990548 0 transposed
Cma11g01798 Cma-Chr11:12031664 Cma13g00622 Cma-Chr13:5990548 0 transposed
Cma13g00622 Cma-Chr13:5990548 Cma18g00392 Cma-Chr18:2147366 0 wgd
Cma13g00622 Cma-Chr13:5990548 Cma03g01291 Cma-Chr3:8390120 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69004 PF00069 Pkinase 5.80E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00622 - - csv:101213542 1750.33