Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00629 ATGGCTTCCACTCGCGAGGCTCACTACAGGGGCGTCAGAAAGAGGCCATGGGGTCGCTACGCCGCTGAGATTCGCGACCCTTGGAAGAAGACCCGTGTCTGGTTGGGCACTTTCGATACCCCTGAAGAAGCCGCCCTTGCTTATGACGGCGCCGCCAGGTCCCTCCGCGGCTCCAAGGCCAAGACCAACTTCCCTCCCCCTCTCTCCCTCGACCTCAACGTCTCCTCCACTCCTACAACCTGCAACTGGCCCTCCTCCTCCGCCGCCCCTTCCTCCTCCTCCTCCTCCTCCTCCGCTCGTCTTCTCCTCGGCGATTTCCTCCGCCACGGCGCTCGAAATGACTTGTGTAATGTCAATGTGGAGGCCTCTCCGGGGCTGGTGGACTCGAGAGATCCAGCGCCCAACACTACGGCGTCGTTTATGGGGCACGTGCGTCGTGGCCTCCCCTTTGATCTGAACGAGCCTCCACCGGTGTGGCTATGA 483 62.32 MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLSLDLNVSSTPTTCNWPSSSAAPSSSSSSSSARLLLGDFLRHGARNDLCNVNVEASPGLVDSRDPAPNTTASFMGHVRRGLPFDLNEPPPVWL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6029634 6030116 - CmaCh13G006290.1 Cma13g00629 306456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00629 160 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Cma13g00629 160 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Cma13g00629 160 CDD AP2 7 65 IPR001471 GO:0003700|GO:0006355
Cma13g00629 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 1 147 - -
Cma13g00629 160 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Cma13g00629 160 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Cma13g00629 160 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Cma13g00629 160 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Cma13g00629 160 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 147 - -
Cma13g00629 160 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00599 Cma-Chr8:3404141 Cma13g00629 Cma-Chr13:6029634 1.38E-26 dispersed
Cma13g00629 Cma-Chr13:6029634 Cma18g00386 Cma-Chr18:2109848 5.88E-75 dispersed
Cma13g00627 Cma-Chr13:6021798 Cma13g00629 Cma-Chr13:6029634 4.68E-31 proximal
Cma01g01222 Cma-Chr1:8835781 Cma13g00629 Cma-Chr13:6029634 1.24E-28 wgd
Cma13g00629 Cma-Chr13:6029634 Cma19g01051 Cma-Chr19:8879470 2.05E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36107 PF00847 AP2 1.60E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00629 - - csv:101212815 246.514