Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00640 ATGAAAGCCATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGCTATCGTTTAGAGTCCTTGCGATTGGCTTCCTTTCCTGCCGCCACTCACCCACCACTCAACTCAGTTGCACAATCAAGATCTCATGTTCTTAACAAGCAGAGGTCCTTGTCTCCGGCTCGGCCTCCACAAACTACGCTTTCCAATGCATTTAAGAGTGCACGTACCGATCAGAAGCGGTTTTCAACGCCACCGCCTCAGAGGAAGGCACCTGGAAAAGAGAAGGGTAGAAGACTATTTAGTAAAAAAGCTAAGGAGCGCAATTCCTTAAAGGAAGAGAAGTTAAAAGGCCTTCTGAGGCATTTTGCCTCATTTAAAGGCAATGGGAAGTCCAAGTTCAAGGAGTCTTCTTGGACAAGGTTTTTTGAGCACAGTGGAGGGAAGGTCACCGCTGTCGAGGCTGTAGATGAATCATCTATTGACCTGTCCAAGTTGAGTTTTGGGCATAAATTTGCTTTCGGAGCTCATAGTCGGCTTTACCATGGACTTTACGAAGATAACGTTGTTGCTGCTAAGATGATCAATCTACCAGTCGATGACGAAAATGGAGAACTCGCAGGTCGCTTAAAAAAGCAGTTTGATAGGGAAGTAACCCTTTTATCTCGTCTCCGCCATCCCAACGTTATAAAGTTGGTAGCAGCTGTGAAAATGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCTGGGTTCCTTAAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACTATTTGCTATTGCCTTGGACATTGCTCGTGGGATGGAATACATTCACTCACAAGGCGTCATTCATCGGGATCTCAAACCTGAAAACGTTCTTATTGATGAAAACTTTTGTCTAAAGATTGCCGATTTCGGCATCGCTTGCGAGGAGGCACGTTGTGATACACTAGCGGATGACCCTGGAACTTTTCGTTGGATGGCCCCTGAGATGATCAAACGTAAACCTTATGGAAGAAAGGTTGATATGTACAGCTTCGGACTCATCCTGTGGGAATTAGTCGCTGGAAAAATCCCTTATGAGGATATGACTCCCATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTGATCCCGAGCGAGTGTCCTCCAGTGATGCAGGCGTTGATGGAGCAATGTTGGTCCACGCAACCAGAGGAGAGGCCGGAGTTTTGGCAGGTGGTAAAAGTATTAGAGCAACTTGAGAGTTGTGTTGGGGGAGATGGTGAAGTGTAG 1308 45.26 MKAMEEDPNSWLRRTKFSHTICYRLESLRLASFPAATHPPLNSVAQSRSHVLNKQRSLSPARPPQTTLSNAFKSARTDQKRFSTPPPQRKAPGKEKGRRLFSKKAKERNSLKEEKLKGLLRHFASFKGNGKSKFKESSWTRFFEHSGGKVTAVEAVDESSIDLSKLSFGHKFAFGAHSRLYHGLYEDNVVAAKMINLPVDDENGELAGRLKKQFDREVTLLSRLRHPNVIKLVAAVKMPPVYCIITEYLPLGSLRAYLHKLEKKSLPLQKLFAIALDIARGMEYIHSQGVIHRDLKPENVLIDENFCLKIADFGIACEEARCDTLADDPGTFRWMAPEMIKRKPYGRKVDMYSFGLILWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPSECPPVMQALMEQCWSTQPEERPEFWQVVKVLEQLESCVGGDGEV 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6076993 6078895 + CmaCh13G006400.1 Cma13g00640 306467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00640 435 Gene3D Phosphorylase Kinase; domain 1 154 249 - -
Cma13g00640 435 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 434 - -
Cma13g00640 435 PRINTS Tyrosine kinase catalytic domain signature 246 259 IPR001245 GO:0004672|GO:0006468
Cma13g00640 435 PRINTS Tyrosine kinase catalytic domain signature 284 302 IPR001245 GO:0004672|GO:0006468
Cma13g00640 435 PRINTS Tyrosine kinase catalytic domain signature 330 340 IPR001245 GO:0004672|GO:0006468
Cma13g00640 435 PRINTS Tyrosine kinase catalytic domain signature 349 371 IPR001245 GO:0004672|GO:0006468
Cma13g00640 435 PRINTS Tyrosine kinase catalytic domain signature 393 415 IPR001245 GO:0004672|GO:0006468
Cma13g00640 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Cma13g00640 435 ProSiteProfiles Protein kinase domain profile. 166 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00640 435 PANTHER TYROSINE KINASE FAMILY PROTEIN 6 434 - -
Cma13g00640 435 MobiDBLite consensus disorder prediction 91 107 - -
Cma13g00640 435 Gene3D Transferase(Phosphotransferase) domain 1 250 429 - -
Cma13g00640 435 CDD STKc_MAP3K-like 173 422 - -
Cma13g00640 435 MobiDBLite consensus disorder prediction 41 84 - -
Cma13g00640 435 MobiDBLite consensus disorder prediction 41 107 - -
Cma13g00640 435 SUPERFAMILY Protein kinase-like (PK-like) 152 422 IPR011009 -
Cma13g00640 435 SMART serkin_6 166 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00640 435 Pfam Protein tyrosine and serine/threonine kinase 167 422 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00640 Cma-Chr13:6076993 Cma13g00893 Cma-Chr13:7203622 3.82E-106 dispersed
Cma14g01733 Cma-Chr14:12718658 Cma13g00640 Cma-Chr13:6076993 1.03E-49 dispersed
Cma15g01268 Cma-Chr15:8052558 Cma13g00640 Cma-Chr13:6076993 4.96E-24 dispersed
Cma13g00640 Cma-Chr13:6076993 Cma18g00374 Cma-Chr18:2041128 0 wgd
Cma13g00640 Cma-Chr13:6076993 Cma03g01267 Cma-Chr3:8307182 0 wgd
Cma13g00640 Cma-Chr13:6076993 Cma07g00240 Cma-Chr7:1094237 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69005 PF07714 PK_Tyr_Ser-Thr 2.10E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00640 - - cmax:111495774 882.478