Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00642 ATGGCCGCTCTGAAACTCCCAATTCTTCTCCTCTCTTTCCCCCTTCTTTTCTGCTCCATATCCGCCCTTGATTTCGTCTTCAACGGCTTCAATTCCACCGATGTCTTCCTCTACGGCAACGCCATCATTGAATCCCGTATCCTCGCCCTCACCAACCAAACCAGTTTCTCAATCGGTCGCGCTCTGTACCCTTCCAAGATCCCCACTAGGGCACCCAATTCCTCCCGCCTCTACTCCTTCTCCACTTCTTTCATCTTCGCCATGGCCCCTTACAGGGATACCCTTCCTGGACATGGCTTGGTTTTCATTTTTGTTCGGGAGACTGGGATCCACGGAACTTCCTCCGCTCAGAATTTGGGGTTTTTGAACTTCACCCTTAATGGGAACCCTAATAACCATGTCTTTGGAATTGAATTCGATGTGTTTGATAATGAGGAATTCAATGACCCCGACGACAATCATGTGGGGATCGACTTGAATTCCTTGACGTCTACCGCTACCGAAGAAGCTGGGTTTTGGTCCGACGATGGCTCGTTTAATAGGTTCCGACTTAATAGCGGAGAAAATTATCAAGTCTGGATTGATTATTCCGATTTTCAGATGAATGTTACGATGGCTCCGGCGGGGATGAAGAGGCCACGGCGGCCGTTGATTAACGCCTCTCTGAATCTCTCCCATATTTTCACCGACGAAATGTATGTGGGGTTTACGAGCTCTACAGGGCAGTTGGTTCAAGGCCACAACATTTTAGCCTGGAGTTTCAGTAACTCTAATTTTTCGTTGAGCGAGAGTTTGATTACCGCTGGATTGCCTTCCTTCGTCCTCCCAAAAGACCCGATTACTAAATCGAAGTGGTTCATCGCCGGAGTGACGGCCGGCGGATTCCTATTCGTTTTCTTCATAGCTACGATTTTGGGGATTTTTATTGCAGACCACCGGAGGAGAGCGAGGGCAAGAGCGGAAATGGAAGACTGGGAATTGGAGTATTGGCCACACCGAATTACATATCAAGAAATCGAATCGGCAACCAAAGGGTTTGCAGAAGAAAATGTCATCGGAATCGGAGGGAATGGAAAGGTGCATAAAGGGGTTTTGACTGGAGGTGGTTCGGAAGTTGCAGTGAAACGAATTTCTCACGAAAACGACGGGATGCGAGAGTTCTTAGCTGAAATATCGAGTATAGGGAGATTGAAACACAGAAATCTAGTCAGTTTGAGAGGTTGGTGTAAGAAAGAGACAGGGAATTTCTTACTCATCTACGATTACATGGAAAATGGAAGTTTAGACAAATGGGTATTTGATTGCGACGAAAGAAACATGTTGAGGTTCGAGGATCGAATTCGAGTATTGAAAAACGTAGCTTCAGGGGTCTTGTATTTACACGAAGGATGGGAATCAAAGGTCCTCCATAGGGACATAAAAGCTAGCAATGTGTTGCTGGACAAAGACATGAATGGAAGACTAGGAGATTTTGGTTTGGCTCGAGTCCATAGCCACAACCAAGTAGCTAGCACGACTCGAATCGTTGGCACCATGGGCTACATCGCGCCGGAGTTGATTCGAACGGGACGAGCCTCGACTGAAACAGACGTGTTTGGTTTTGGTGTTTTGATTTTGGAAGTGATGTGTGGGAGGAGACCAATAGAGGAAGGGAAGCCAGCATTAGTGGATTGGGTTCGACGATTGGCGGCTGAAGGGGAGATCACAGCAGCAGTCGACGAGCGACTGAGGAAGAAGGGCGGGTGGAACGAGGAGGAAGTCGAGAGAGTGTTACATTTGGGATTGTTATGTGTACATCCCGACCCGAAAACTCGACCGAAGATGAGGCAAATTGTGAAAATTTTGGAAGGAAAAATAGAGATGGATGAGAATGAGAGTGAGAGCATGAATGCTTATTTGCTTGAAAGATTGAAGTCGCAAGGAACGTGGTGTGATTCTAGCGTTGGTTTTGGGCATAAACATCCAACGTTTGAGGATTTTCTTCAGTCTTCTTCAACCTCCATGTCTTGGTCCGATTCCATTGTAGTGGGCAGGTGA 2037 46.98 MAALKLPILLLSFPLLFCSISALDFVFNGFNSTDVFLYGNAIIESRILALTNQTSFSIGRALYPSKIPTRAPNSSRLYSFSTSFIFAMAPYRDTLPGHGLVFIFVRETGIHGTSSAQNLGFLNFTLNGNPNNHVFGIEFDVFDNEEFNDPDDNHVGIDLNSLTSTATEEAGFWSDDGSFNRFRLNSGENYQVWIDYSDFQMNVTMAPAGMKRPRRPLINASLNLSHIFTDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITAGLPSFVLPKDPITKSKWFIAGVTAGGFLFVFFIATILGIFIADHRRRARARAEMEDWELEYWPHRITYQEIESATKGFAEENVIGIGGNGKVHKGVLTGGGSEVAVKRISHENDGMREFLAEISSIGRLKHRNLVSLRGWCKKETGNFLLIYDYMENGSLDKWVFDCDERNMLRFEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHSHNQVASTTRIVGTMGYIAPELIRTGRASTETDVFGFGVLILEVMCGRRPIEEGKPALVDWVRRLAAEGEITAAVDERLRKKGGWNEEEVERVLHLGLLCVHPDPKTRPKMRQIVKILEGKIEMDENESESMNAYLLERLKSQGTWCDSSVGFGHKHPTFEDFLQSSSTSMSWSDSIVVGR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6083816 6085852 - CmaCh13G006420.1 Cma13g00642 306469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00642 678 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Cma13g00642 678 CDD lectin_legume_LecRK_Arcelin_ConA 23 252 IPR001220 GO:0030246
Cma13g00642 678 Pfam Legume lectin domain 23 258 IPR001220 GO:0030246
Cma13g00642 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Cma13g00642 678 SUPERFAMILY Protein kinase-like (PK-like) 324 616 IPR011009 -
Cma13g00642 678 Pfam Protein kinase domain 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00642 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cma13g00642 678 Gene3D - 21 264 - -
Cma13g00642 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 8 672 - -
Cma13g00642 678 CDD STKc_IRAK 352 617 - -
Cma13g00642 678 ProSiteProfiles Protein kinase domain profile. 346 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00642 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 262 IPR013320 -
Cma13g00642 678 PANTHER - 8 672 - -
Cma13g00642 678 Gene3D Transferase(Phosphotransferase) domain 1 423 639 - -
Cma13g00642 678 SMART serkin_6 346 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00096 Cma-Chr10:388019 Cma13g00642 Cma-Chr13:6083816 2.73E-170 dispersed
Cma13g00642 Cma-Chr13:6083816 Cma14g00124 Cma-Chr14:532341 2.52E-167 dispersed
Cma11g01881 Cma-Chr11:12473256 Cma13g00642 Cma-Chr13:6083816 0 wgd
Cma13g00642 Cma-Chr13:6083816 Cma18g00370 Cma-Chr18:2011296 0 wgd
Cma13g00642 Cma-Chr13:6083816 Cma19g00989 Cma-Chr19:8609121 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69006 PF00069 Pkinase 4.40E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00642 - - csv:101222577 1123.23