Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00676 ATGAACGACTTATTCTCGAATTCGTTCAAACAGTACACGGATCTGAAGCAACAGGCGTCTGTGGACGGCATGGAGTCTGGGAATGAGACTGTGAATTTGGACACGTTCTTCGAGGATGTCGAGAATGTTAAAGACGACATGAAACAGGTCGAGAATTTGTACAAGAAATTGCAACAGGACAATGAGGAATGCAAGATTGTCCACAATGCCAAGACGATGAAGGAGCTGAGGGGCAGAATGGAGGCCGATGTCGCCCAGGTTCTGAAGCGAGTCAAAATGATTAAAGGCAAACTCGAGGCTCTGGATCGTTCCAACGCCGCTCACCGCAGCCTCCCCGGTTGCGGCCCTGGCTCCTCCGCCGACCGAACCCGAACCTCCGTCGTCAGCGGCTTGGGGAAGAAGCTCAAAGATGTCATGGATGAGTTTCAAGGCCTCAGAGGTCGAATGAACGCCGAATACAAAGAAACCATCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAAGCCGACGAAGAGACAATAGAGAATTTGATAGCAAGTGGGGAAAGCGAGAGCTTCCTCCAGAAGGCGATTCAAGAACAGGGGAGGGGTCAGATAATGGACACAATCTCAGAGATTCAGGAGCGACACGACGCTGTGAAGGAGATAGAGAAGAATTTGTTAGAGCTGCATCAAATTTTCTTGGACATGGCGGCGCTAGTGGAGGCACAAGGGCACCAGCTGAACGACATCGAGAGCCATGTCGCGCATGCGAACTCGTTCGTGAGAAGAGGAACAGAGCAGCTTCAGGAAGCCAGAGAGATACAGAAGAGCTCGAGGAAATGGACTTGCTATGCCATTATCTTGGGGGTTGTTCTTATTATCATCATCCTCTTCCCGATCTTGACTACAATTTTACCTCATTTGTTGTAG 912 50.11 MNDLFSNSFKQYTDLKQQASVDGMESGNETVNLDTFFEDVENVKDDMKQVENLYKKLQQDNEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDEFQGLRGRMNAEYKETIERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREIQKSSRKWTCYAIILGVVLIIIILFPILTTILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6245413 6246796 - CmaCh13G006760.1 Cma13g00676 306503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00676 303 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Cma13g00676 303 Gene3D - 193 298 - -
Cma13g00676 303 CDD SNARE_syntaxin1-like 202 264 - -
Cma13g00676 303 Pfam Syntaxin 36 238 IPR006011 GO:0016020
Cma13g00676 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Cma13g00676 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma13g00676 303 CDD SynN 33 190 IPR006011 GO:0016020
Cma13g00676 303 Gene3D - 33 160 - -
Cma13g00676 303 PANTHER SYNTAXIN 6 294 IPR045242 -
Cma13g00676 303 SMART tSNARE_6 198 265 IPR000727 -
Cma13g00676 303 Coils Coil 33 67 - -
Cma13g00676 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cma13g00676 303 Pfam SNARE domain 240 291 IPR000727 -
Cma13g00676 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00248 Cma-Chr3:3546408 Cma13g00676 Cma-Chr13:6245413 1.23E-89 dispersed
Cma03g00740 Cma-Chr3:5887631 Cma13g00676 Cma-Chr13:6245413 9.55E-62 dispersed
Cma07g01172 Cma-Chr7:6428287 Cma13g00676 Cma-Chr13:6245413 4.18E-91 dispersed
Cma13g00676 Cma-Chr13:6245413 Cma14g00365 Cma-Chr14:1632018 3.27E-107 dispersed
Cma13g00676 Cma-Chr13:6245413 Cma18g00344 Cma-Chr18:1843481 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00676 K08486 - csv:101217140 516.924