Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00678 ATGGCGTCCATTAAACGCCGTCACCAAGTGGACGATCATGAGGCGAAGAAAGCCAAATTTTCCTGTGTTTCAGATGCTTCTGAGGTGAAGGGGCAGCATCCAGTGGTGCTCAACCCAGCCGACTGCGACTTGGATTTCAAGATTGAAAGTGATGGTCTTCGAGGATCAGCTCTTTATGAGCAAGGTTTTGCTTACTGCTGGTCCGGTGCTCGGGCCACCGTTGGTATTACTGGTGGAAAATATTGTTTTGGTTGCAAGATTATCTCTTTACAGCCAGTTGAAATGAATGATACTGCTACAGATCAGCAGCATCTTTGTCGTCTCGGCATTTCCATAGGGGACAGTCCAGTGGGTAATCTTGGAGAAACTAAACAAAGTTTTGGATTTGGTGGCACAGGAAAGTTCTCAAATGCTGGAAAATTTTCTGACTATGGTGAAAAGTTTGGGATTGGTGATACCATTGTTTGTGCTGTAAATCTTGAAAGCAATCCTCTGGCCTCTATTGGATTTTCCAAAAATGGCAAATGCTTGGGTACTGCAATACAATTTGATGCCGGTCCAAGAGGCCTTGGAGTAGTGGATTCTCCATTGGGGAAGCTTCGATGGGAATCAGCACTTTTCCCTCATGTATTGTTGAAGAATGTTGAGGTCCAGTTACAATTCAGTGTTGAAGAGGGGCTTGTTCCAGAAGAAGGCTTTAAACCGTGGGCCACTGCTTTGGATGATAACAATGCATTGATAGGGCCTACTTTTAATAATGTAAGAGATTGTGAAGTCATGATGATGGTGGGTCTACCGGCTTCTGGAAAAAGTACATGGGCCAAGAAATGGGCAGATCAACATCCTGAGAAACGCTATATTTTGCTTGGGACTAATCTAATTCTGGATCAAATGAAGTTACCAGGTCTATTGCGAAAGCATAATTATGGACAACGCTTTGATTGTTTGATGGACCAAGCAACTAGGATTTTCAACATACTTCTGTCTAGAGCAGCTACCATACCTCGCAATTACATAATTGATCAAACAAATGTTTACAAAAATGCACGGAAACGGAAACTGAAACCATTTGTGTACTTCCAGAAAATTGCTGTTGTGGTATTCCCAAGGCCCAAGGAGTTGCAGCGTCGATCGGCCGAAAGATTTAGTGAAATGGGGAAAGAAGTGCCAGCTGATGCAGTGAATGAAATGTTAGCGAATTTTATCCTGCCCACTAGCAAGAACATGCCTGGTTCGGAAGAATTTTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGGTATTTGGATGGGATGAAACGTGCTCTAACATCGGAATCACGTGACAACTTAACGTCATTTTCTAAAGCTATTACTGCTCCTCCTCATGTTTTACCTTCATCTCAAAATCAAGGTCTACGTGGTACAACAGATGCTAGACAATATGGAAATCCAAGGTTTATTTCTGAAGTACATCAAGAAAATATGTACTCTCCTTCACCTAGGTTTGTTACCCTTCACAGACCATACGAGAGTTTAATGGGTGAAACCAGGTACCCTGGTCCAAGTAGCCATCCGCTTCACCGCTATCCAGGGAGTGATCCTTACAGCATTGGTGGACATTTCCGGGATAGTCGTCAAATGGGTGAACTCTCCCCAAGGGAATACACTGGTGTAGCTTATTCCTTCCCTCCCACTGGTCCACCGTATGGAACCCCACCTCCAAGACCTGCATATCAATTTCCTTCTAATATGCCACGTGGTAGAGGTTATGCCTCCCCACGTCCAAGAGTCGAAATCGTGAACCATTGTAATTATTCTGGCTCCATATGGACAAGTGCCGAAGAACCATACGGCTTTTGCAGCGAAGATATGCCAACGTACGCTTTCTATAACAGAGTTTCCAGACTTTTCCGGGACCATCCGTCGTTTTCCAGGCTCCTTGTTCTTGTCTCCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACGAATGGGGTACCCAGTATTGCATCTAAAGCCAATGTAGATGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATTTTAAAGATCCGTCGTATGAGGTTCAAGTGATATCACCTCGAAATTATTTTGCGTTCACCCCATTATTACCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCCATTCGCAACATTGTGAGAAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAATGCTACAAGATTGATGCTGAAAACAAAAAACTCTACTGCCGATCTAACGAAAACAACAATCTGAATGGAAAAAAGGAATTTGTTGTGGACTACGACTACCTGGTGATATCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGCGTTGTGGAGAATTGCCATTTCTTAAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCCTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAACGAGGACTTGGTCAAGTTATATCCTGGACTTCAAGATTTTGTAAGAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTCAAGACAGGATCGATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCCTCTATGCCTTATGGAATGACTGTATGGTCAACTGGAATAGGAACACGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGACGAATGGCTTCGAGTAGAGGGATGCGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTATCAAGGCAGACAAAGACAATTCTGGGACACTAACAGTTAAAGAATTTAAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAAATGCACGACATTGTTGATCTTTTAAAAGGATCCAAAGGGGATGTGGCAAAGGAGTCAATCGCACTAGACATTGAAGAGTTTAAATCCGCCCTTTCCCAAGTTGATTCACAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCGCAACAAGGCGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAATGCGAAAGCAATCCTGAAGGTCCTCTGAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCATTAGGAGGAGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTATTCTGTCTATGCAAGCAAGCAAGTTAGTTGGCGGACAAGAGCACTGGTGGTTACAGATTGGACGAGGCGTTTTGTTTTTGGAAGAGATTCGAGTCGCATATGA 3618 43.26 MASIKRRHQVDDHEAKKAKFSCVSDASEVKGQHPVVLNPADCDLDFKIESDGLRGSALYEQGFAYCWSGARATVGITGGKYCFGCKIISLQPVEMNDTATDQQHLCRLGISIGDSPVGNLGETKQSFGFGGTGKFSNAGKFSDYGEKFGIGDTIVCAVNLESNPLASIGFSKNGKCLGTAIQFDAGPRGLGVVDSPLGKLRWESALFPHVLLKNVEVQLQFSVEEGLVPEEGFKPWATALDDNNALIGPTFNNVRDCEVMMMVGLPASGKSTWAKKWADQHPEKRYILLGTNLILDQMKLPGLLRKHNYGQRFDCLMDQATRIFNILLSRAATIPRNYIIDQTNVYKNARKRKLKPFVYFQKIAVVVFPRPKELQRRSAERFSEMGKEVPADAVNEMLANFILPTSKNMPGSEEFFDEVIFVELDRAESQRYLDGMKRALTSESRDNLTSFSKAITAPPHVLPSSQNQGLRGTTDARQYGNPRFISEVHQENMYSPSPRFVTLHRPYESLMGETRYPGPSSHPLHRYPGSDPYSIGGHFRDSRQMGELSPREYTGVAYSFPPTGPPYGTPPPRPAYQFPSNMPRGRGYASPRPRVEIVNHCNYSGSIWTSAEEPYGFCSEDMPTYAFYNRVSRLFRDHPSFSRLLVLVSVSGGSLVAYADASPTNGVPSIASKANVDEKKKKVVVLGTGWAGTSFLKNFKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENKKLYCRSNENNNLNGKKEFVVDYDYLVISVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVRITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFIKADKDNSGTLTVKEFKEVIDDICERYPQVELYLKNKQMHDIVDLLKGSKGDVAKESIALDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECESNPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6257337 6267904 + CmaCh13G006780.1 Cma13g00678 306505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00678 1205 Pfam AAA domain 259 401 - -
Cma13g00678 1205 ProSitePatterns EF-hand calcium-binding domain. 1016 1028 IPR018247 -
Cma13g00678 1205 SMART SPRY_3 78 225 IPR003877 GO:0005515
Cma13g00678 1205 PANTHER NADH DEHYDROGENASE 625 1205 IPR045024 GO:0003954|GO:0006116
Cma13g00678 1205 Gene3D - 671 1019 - -
Cma13g00678 1205 Gene3D - 1049 1204 - -
Cma13g00678 1205 Gene3D - 32 247 IPR043136 -
Cma13g00678 1205 SUPERFAMILY FAD/NAD(P)-binding domain 680 899 IPR036188 -
Cma13g00678 1205 SUPERFAMILY EF-hand 996 1091 IPR011992 -
Cma13g00678 1205 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 182 IPR013320 -
Cma13g00678 1205 SUPERFAMILY FAD/NAD(P)-binding domain 838 1000 IPR036188 -
Cma13g00678 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 429 IPR027417 -
Cma13g00678 1205 CDD SPRY_hnRNP 35 225 IPR035778 -
Cma13g00678 1205 PRINTS FAD-dependent pyridine nucleotide reductase signature 786 804 - -
Cma13g00678 1205 PRINTS FAD-dependent pyridine nucleotide reductase signature 683 702 - -
Cma13g00678 1205 PRINTS FAD-dependent pyridine nucleotide reductase signature 847 865 - -
Cma13g00678 1205 PANTHER NAD(P)H DEHYDROGENASE B2 625 1205 - -
Cma13g00678 1205 Pfam SPRY domain 102 182 IPR003877 GO:0005515
Cma13g00678 1205 Gene3D - 253 433 IPR027417 -
Cma13g00678 1205 ProSiteProfiles EF-hand calcium-binding domain profile. 1003 1038 IPR002048 GO:0005509
Cma13g00678 1205 Pfam Pyridine nucleotide-disulphide oxidoreductase 681 1006 IPR023753 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00129 Cma-Chr2:623564 Cma13g00678 Cma-Chr13:6257337 3.24E-165 dispersed
Cma13g00678 Cma-Chr13:6257337 Cma20g00341 Cma-Chr20:1677752 2.93E-13 dispersed
Cma02g00130 Cma-Chr2:624970 Cma13g00678 Cma-Chr13:6257337 1.98E-107 transposed
Cma13g00678 Cma-Chr13:6257337 Cma19g00965 Cma-Chr19:8488705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00678 K03885 - csv:101204145 1122.07