Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00689 ATGATGACGTCTGGTGAAAGAGAAAAGAATTTGAAGCAAACACGGGAGAGTGATAATATGATTGAGGATGATATCAAACTTGAGGAGCTACCACTTTATGACTTTGAGAAGCTAGCAATTGCAACCAATGAGTTTGATATGAGCAACAAGCTTGGGCAGGGTGGGTTTGGGCCCGTATATAAGGGGAGATTATTGAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCCTCTAAACAAGGGTATGAAGAGTTTATAAATGAAGTGAGAGTGATTTCAAAGCTGCAACACAGGAATCTTGTACGCCTTTTGGGATGTTGCATTGAAGGAGAAGAGAAGATGTTAATATATGAGTATATGCCCAACCTAAGTTTGGATGCCTTCATCTTTGGCTCCCGTGTAAAAAAATTTCTCGATTGGAGTAAAAGATTTAATATTATCGATGGAATTGCTCGAGGTCTTCTTTACCTTCACAGGGATTCGAGATTGAAAATCATTCATAGAGATCTCAAGGTAAGTAACATTTTGTTAGACAAAGATTTGAACCCTAAAATTTCAGATTTTGGCATGGCAAGAATTTTTTACAGCAATGAAGTTCAAGCAAACACTTTAAGAGTTGTCGGAACTTATGGATATATGTCTCCTGAGTATGCCATGCAAGGTCAATTTTCAGAAAAATCAGATGTATTTAGTTTTGGAGTTTTATTGCTCGAAATTATTAGTGGGAAGAGAAATACAGAGTTCTATGGCCATCAACATGCCATAAGCTTACTCGGATTTGTATGGAAGCTTTGGATGGAAGACAATCTTATTCCTTTGATTGAACCAACAATATATGAGCCACGTTACCAATTAGAGATTTTGAGATGCATTCAAGTGGGGCTCTTATGCGTTCAAGAATTTGTGAATGATCGGCCAAATGTTTCCACTATCATTTCAATGATTAACAGTGAAATCGTTGATCTTCCTTCTCCAAATCAGCCTGGCTTTGTCGGCAGACCATATGAAAGTAGCACAGAATCTTCTCAACCAAACTTAGATAAATATTCAACAAATAATGTTACAGTTACTACAATTGCAGCTCGATAA 1092 37.27 MMTSGEREKNLKQTRESDNMIEDDIKLEELPLYDFEKLAIATNEFDMSNKLGQGGFGPVYKGRLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSRVKKFLDWSKRFNIIDGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFYSNEVQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTEFYGHQHAISLLGFVWKLWMEDNLIPLIEPTIYEPRYQLEILRCIQVGLLCVQEFVNDRPNVSTIISMINSEIVDLPSPNQPGFVGRPYESSTESSQPNLDKYSTNNVTVTTIAAR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6299756 6301232 - CmaCh13G006890.1 Cma13g00689 306516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00689 363 SMART serkin_6 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00689 363 CDD STKc_IRAK 51 317 - -
Cma13g00689 363 Pfam Domain of unknown function (DUF3403) 318 363 IPR021820 GO:0004674
Cma13g00689 363 Gene3D Phosphorylase Kinase; domain 1 4 120 - -
Cma13g00689 363 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 332 - -
Cma13g00689 363 SUPERFAMILY Protein kinase-like (PK-like) 25 315 IPR011009 -
Cma13g00689 363 Pfam Protein tyrosine and serine/threonine kinase 47 259 IPR001245 GO:0004672|GO:0006468
Cma13g00689 363 Gene3D Transferase(Phosphotransferase) domain 1 121 323 - -
Cma13g00689 363 ProSiteProfiles Protein kinase domain profile. 45 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00689 363 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 19 332 - -
Cma13g00689 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00689 Cma-Chr13:6299756 Cma19g00948 Cma-Chr19:8421147 2.20E-144 dispersed
Cma18g00335 Cma-Chr18:1794116 Cma13g00689 Cma-Chr13:6299756 6.09E-51 dispersed
Cma13g00689 Cma-Chr13:6299756 Cma13g00691 Cma-Chr13:6304253 0 proximal
Cma01g01169 Cma-Chr1:8503318 Cma13g00689 Cma-Chr13:6299756 5.97E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69007 PF07714 PK_Tyr_Ser-Thr 3.00E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00689 - - cmos:111434313 709.138