Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00691 ATGAACCCCAAAAACATCTGCGCCTTCTCATTTCTTCTTCTTTCATCTATATGCTTCGGCAAAGATTCAATCACATCTGAAAGTTTCATCAAAGACCCTGCAACCATAACCTCAAATGGCAGCTCCTTCCAGTTGGGGTTCTTCACACCACTTAATTCCACCGCCCGATATGTCGGAATTTGGTACAACCAAATCCCCTTACAAACCATCGTGTGGGTAGCAAATGCAAACAACCCTCTCCACGATTCTTCCGGGATTTTCACGATTTCCAAGGATGGAAATCTTGTCGTCTCAAATGGAAACCACACCGTCCTCTGGTCTTCAAATGTTACTTCTCCAACAGCCAACACAACCGCTCGAATCCTCGATTCGGGCAACCTTGTTTTGGAAGATCCTGCTTCTGGGTTGGTTATATGGGAGAGCTTCAAACATCCTTCCAATTCATTCTTGCCTCCCATGAAACTCATCTCAAGCAAAAGCACCACACAGAAGGTCGAGTTTAGATCATGGAAAACCGCTTCCGATCCATCTACAGGTAACTTTTCTTTGGCCTTAGATGTTCGCAGTATCCCTGAAGCTGTCATTTGGAATGGCAATAACCCATATTGGAGATCTGGTCCATGGAACGGTCTGACTTTCATGGGAGTACCCGAAATGATCTCTGTTTATCGCATTGGGTTTAATCTTGAGAATGAAAACCAAACTTTTTATTTCTCAATTTCTTATAATAACGACAATCAATTACTCAATACCATGCTATTAAGCCCGCAAGGCGATCTATTGCAAGAGTACTGGGATCCGTCGGAAGAAAGCTGGGCGGCAGCTTGGTCGGCTCTTAGAACGCCGTGTGATTACTACGGTGCTTGTGGGCCGTTCGGGATATGTAATGCGAATGCATCTCCAATTTGCAGCTGCTTAAGAGGGTTTAAGCCAAGGAATGCGGCGGAGTGGAGTCAAGGAAATTGGAGTAATGGGTGTGTGAGAAACACACCATTGCAGTGTGAGAAGTCCACCAACGCTACCAGTGGTGAGGAAGATGGGTTTTTTAAAGTGGAATTGGTTAAAGTTCCATTTTTGGCAGAGTGGTCCAATTCCTCTTCTTCAGCGAATGAATGCAAACAAGAGTGCTTTGAGAATTGCTTGTGTCGTGCTTATGCATATGAAAATGGTATTGGTTGTATGCTGTGGAGAAGCGACTTAGTTGATGTCCAGAAGTTTGAAGGCATTGGAGCTGATCTTTATGTTCGACTGGCGGATCCAGAGTTAGACACAATTAATGATGCAGAAAGCAAGACTGGAATTATTCTAGCCGCAGTTCTTCCAGCAACGCTTATCATCTTCTTCATTGCCATTTGCTTCTGGGATGACATGATTGAGGACAAAATTAAACTTGAAGAGCTGCCTGTTTATGAGTTTGAGAAGCTGGCAACCGCAACAGACAGCTTTGATCAACGTAAAAAGCTTGGACAAGGTGGGTTTGGTCCTGTATATAAGGGAATATTATTAGATGGACAAGAAATAGCAATAAAGAGGCTTTCAAGAGCTTCAAATCAAGGGTATGAAGAGTTCATAAATGAAGTGATCGTGATATCAAAGCTACAACATAGAAACCTCGTACAGCTTCTCGGCTGCTGCATCGAAAGAGAAGAGAAGATGCTTATCTATGAGTATATGCCCAACCTCAGTTTGGATGCCTTCATCTTTGACTCGAACAAACAAAAACTCTTGGATTGGAGAAAACGATTCAACATTGTCGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCGAGATTAAGAATCATTCATAGGGATTTGAAGGCAAGTAATATATTATTAGACAAAGATATGAATCCGAAAATCTCGGACTTTGGTATGGCAAGAATTTTCGGTAGTAATGAAGTGCAAGCCAATACTATAAGGGTCGTTGGAACTTATGGATATATGTCACCTGAGTATGCAATGCAAGGACAATTTTCCGAGAAATCAGATGTTTTTAGCTTTGGAGTTTTATTGCTTGAGATTATAAGTGGGAGACGAAACACGGGGTTCAACCGCCATGAATATGCTTTAAGCTTATTGGAGTTTGCATGGAAGTTGTGGACAGAAGACAATCTTATTGCTTTGATTGATCCAACAATATACAAACCGTGCTATCAATCAGATATTTTGAGGTGCATCCAAGTGGGACTGTTATGTGTTGAAGAATCTATAAACGATAGACCAACTGTTCTTACCATTATTTCAATGCTCAACAGTGAAATTGTAGACCTTCCTACTCCAAAGCAACCTAGCTTTATTGGTAGACCAGCTCCAACCATGAAATTCAGACATCAAATTTGCAGCTTTAGGTGCTGTCGATCTCTTCTGCTGCTGCTTTCATTGACATCCTTCTGTTCAAGATTTGGCTTTGCCGGCGATATGATCACATCAGCAAATTTCATCAAAGACCCAGCAACCATTTTATCTAATGGTAGTGTTTTCGAGTTGGGGTTCTTCTCGCCTGTTAATTCAACCCGCCGATATGTCGGAATTTGGTTCCAGAAATTTTCCCCACAAACCATAGTATGGGTGGCCAACAGAGACAACCCTGTTAAAGATACTTCTGGGATTTTCACCATTTCCAAGGATGGGAATCTTGTCGTCTTGGATTCAAACAACAGCATCCTTTGGTCTTCAAATGTTTCTTCCTCTGCAATTAGAACCGACAACACAAGTGCTCAGATTTTAGATTCCGGAAACCTGGTTTTGAAAGATTCTACGTCTGGGGTGATTATATGGGAGAGTTTCAAACACCCTTGTGATAAATTCTTGACTTCCATGAAGATTAAGACAAACACAAGAACTAAAGAGGTGGTCGGATATACCTCATGGAACACTCCTTCCGATCCATCTACAGGTAAGTTTTCATTTCTGCTGGATGTTCATGATCTTCCTGAAGCTGCCATTTTGAATGGGGGTGATACTTATTGGCGTTCTGGTCCATGGAGCGGTCAGTCTTTTATTGGAATACCTGAAATGAACTCTGTTTATCTCTCTGGATATAACCTCGCAATCGAAGACCAAACTTACACTCTCTCTCTTGCTTCCAAATATGCCTTTCGAGAATTTTCTTACTTGTTCGTAAACTCACAAGGGAATGTTCAGCAAATGGATTGGGATTCTGAGAAGCAGCACTGGAACGTTAGTTGGTTGGCTCTGAAAACAGAGTGCGATTTCTATGGCGCTTGTGGGGCGTTTGGGATCTGTAATGCAAGAACATCCCCTGTTTGCAGCTGTTTAAGAGGGTTTGAGCCAAAGCACGAAGAGGAATGGAATCAAGGAAATTGGAGTAATGGGTGTGTGAGAAAGACGCCATTAAAATGCGAGAACAGGTCTAGTACAGAGGAAGATGGGTTTTTTAAACTGGAAATGGTTAAAGTTCCATTTTTGGCAGAGTGGTCTAATTCCTCTGCTTCCGTAGACGATTGCAGGCGCGACTGCTTGGAAAATTGTTGGTGTTCTTCTTACGCATTCGAGAATGAAATATGCATGCACTGGAGAAATGCCTTAATTGATATACAAAAGTTCGAGAGAGGTGGAGCAGATCTTTACCTTCGAATGGCATTCGCAGATTTAGATTCAAATAATGTAAGAGACAAGAAACGAATTATTATAGCCGTGGTTGTACCATCAACGCTTGTCACCTTCATCATTGCCATAGCCTTTTGCTGGATATGGAAGACTAAAAAACAGAAGAAGAAGATAATGATGACGTCTGGTGAAAAAGAAAAGATTTTGAAGCAAACGCGGGAGAATGATAACATGATTGAGGATGATATCAAACTTGAGGAGCTACCACTTTATGACTTTGAGAAGCTAGCAATTGCAACCAATGAGTTTGATATGAGCAACAAGCTTGGGCAGGGTGGGTTTGGGCCCGTATATAAGGGGAGATTATTGAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCCTCTAAACAAGGGTATGAAGAGTTTATAAATGAAGTGAGAGTGATTTCAAAGCTGCAACACAGGAATCTTGTACGCCTTTTGGGATGTTGCATTGAAGGGGAAGAGAAGATGTTGATCTATGAGTATATGCCCAACTTAAGTTTGGATGCATTCATCTTTGGCTCTCCCAACCAACAAATTCTTGATTGGAGAAAAAGATTCCATATTATCGATGGAATTGCTCGTGGCCTTCTTTACCTTCACAGGGATTCAAGATTGAAAATCATTCACCGAGATCTCAAAGCAAGTAATATTTTGTTAGATAAAGATTTGAACCCTAAAATTTCAGACTTTGGCATGGCAAGAATCTTTTACGGCAATCAAGATCAAGCAAATACTTTAAGAGTTGTCGGAACTTATGGATATATGTCTCCCGAATATGCAATGCAAGGTCAATTTTCAGAAAAATCAGACGTTTTTAGTTTTGGAGTTTTACTACTTGAAATTATTAGCGGAAGACGAAATACAGGGTTCTACCTCCATGAATATGGCATAAGCTTATTGGGATTTGTATGGAAGTTGTGGACTGAAGGCAATCTTATTCCTTTGATTGAACCAGCAATATATGAACTAGGCTACCAATTAGAGATTTTGAGATGCATTCAAATAGGGCTCTTATCCGTTCAAGAATTTGTAAATGATAGGCCAAATGTGTCCACTATTATTTCAATGCTCAACAGTGAAATTGTCGATCTTCCTTCTCCAAAGCAGCCAGGCTTTGTTGGTAGACCACATGAAAGTAACACACAACCTTCTCAACCAAATTCAGATAAATATTCAGCAAATAATGTTACACTTACTACAATTATAGCTCGATAA 4845 40.89 MNPKNICAFSFLLLSSICFGKDSITSESFIKDPATITSNGSSFQLGFFTPLNSTARYVGIWYNQIPLQTIVWVANANNPLHDSSGIFTISKDGNLVVSNGNHTVLWSSNVTSPTANTTARILDSGNLVLEDPASGLVIWESFKHPSNSFLPPMKLISSKSTTQKVEFRSWKTASDPSTGNFSLALDVRSIPEAVIWNGNNPYWRSGPWNGLTFMGVPEMISVYRIGFNLENENQTFYFSISYNNDNQLLNTMLLSPQGDLLQEYWDPSEESWAAAWSALRTPCDYYGACGPFGICNANASPICSCLRGFKPRNAAEWSQGNWSNGCVRNTPLQCEKSTNATSGEEDGFFKVELVKVPFLAEWSNSSSSANECKQECFENCLCRAYAYENGIGCMLWRSDLVDVQKFEGIGADLYVRLADPELDTINDAESKTGIILAAVLPATLIIFFIAICFWDDMIEDKIKLEELPVYEFEKLATATDSFDQRKKLGQGGFGPVYKGILLDGQEIAIKRLSRASNQGYEEFINEVIVISKLQHRNLVQLLGCCIEREEKMLIYEYMPNLSLDAFIFDSNKQKLLDWRKRFNIVDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVQANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFNRHEYALSLLEFAWKLWTEDNLIALIDPTIYKPCYQSDILRCIQVGLLCVEESINDRPTVLTIISMLNSEIVDLPTPKQPSFIGRPAPTMKFRHQICSFRCCRSLLLLLSLTSFCSRFGFAGDMITSANFIKDPATILSNGSVFELGFFSPVNSTRRYVGIWFQKFSPQTIVWVANRDNPVKDTSGIFTISKDGNLVVLDSNNSILWSSNVSSSAIRTDNTSAQILDSGNLVLKDSTSGVIIWESFKHPCDKFLTSMKIKTNTRTKEVVGYTSWNTPSDPSTGKFSFLLDVHDLPEAAILNGGDTYWRSGPWSGQSFIGIPEMNSVYLSGYNLAIEDQTYTLSLASKYAFREFSYLFVNSQGNVQQMDWDSEKQHWNVSWLALKTECDFYGACGAFGICNARTSPVCSCLRGFEPKHEEEWNQGNWSNGCVRKTPLKCENRSSTEEDGFFKLEMVKVPFLAEWSNSSASVDDCRRDCLENCWCSSYAFENEICMHWRNALIDIQKFERGGADLYLRMAFADLDSNNVRDKKRIIIAVVVPSTLVTFIIAIAFCWIWKTKKQKKKIMMTSGEKEKILKQTRENDNMIEDDIKLEELPLYDFEKLAIATNEFDMSNKLGQGGFGPVYKGRLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFGSPNQQILDWRKRFHIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDLNPKISDFGMARIFYGNQDQANTLRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTGFYLHEYGISLLGFVWKLWTEGNLIPLIEPAIYELGYQLEILRCIQIGLLSVQEFVNDRPNVSTIISMLNSEIVDLPSPKQPGFVGRPHESNTQPSQPNSDKYSANNVTLTTIIAR 1614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6304253 6312088 - CmaCh13G006910.1 Cma13g00691 306518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00691 1614 ProSiteProfiles Bulb-type lectin domain profile. 21 142 IPR001480 -
Cma13g00691 1614 Pfam S-locus glycoprotein domain 203 312 IPR000858 GO:0048544
Cma13g00691 1614 Pfam S-locus glycoprotein domain 993 1102 IPR000858 GO:0048544
Cma13g00691 1614 Gene3D Transferase(Phosphotransferase) domain 1 558 760 - -
Cma13g00691 1614 Gene3D Transferase(Phosphotransferase) domain 1 1372 1574 - -
Cma13g00691 1614 Pfam Protein tyrosine and serine/threonine kinase 1298 1494 IPR001245 GO:0004672|GO:0006468
Cma13g00691 1614 Pfam Protein tyrosine and serine/threonine kinase 484 751 IPR001245 GO:0004672|GO:0006468
Cma13g00691 1614 SUPERFAMILY Protein kinase-like (PK-like) 1276 1567 IPR011009 -
Cma13g00691 1614 ProSiteProfiles Protein kinase domain profile. 1296 1614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00691 1614 SMART serkin_6 1296 1554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00691 1614 SMART serkin_6 482 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00691 1614 PANTHER - 6 784 - -
Cma13g00691 1614 PANTHER - 791 1595 - -
Cma13g00691 1614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1417 1429 IPR008271 GO:0004672|GO:0006468
Cma13g00691 1614 Pfam D-mannose binding lectin 69 171 IPR001480 -
Cma13g00691 1614 Pfam D-mannose binding lectin 856 960 IPR001480 -
Cma13g00691 1614 CDD STKc_IRAK 1302 1568 - -
Cma13g00691 1614 CDD PAN_AP_plant 1120 1204 - -
Cma13g00691 1614 CDD PAN_AP_plant 330 418 - -
Cma13g00691 1614 Gene3D Phosphorylase Kinase; domain 1 1254 1371 - -
Cma13g00691 1614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Cma13g00691 1614 MobiDBLite consensus disorder prediction 1585 1614 - -
Cma13g00691 1614 CDD B_lectin 815 935 IPR001480 -
Cma13g00691 1614 ProSiteProfiles Bulb-type lectin domain profile. 808 932 IPR001480 -
Cma13g00691 1614 ProSiteProfiles PAN/Apple domain profile. 1124 1204 IPR003609 -
Cma13g00691 1614 MobiDBLite consensus disorder prediction 1582 1614 - -
Cma13g00691 1614 Gene3D - 17 143 IPR036426 -
Cma13g00691 1614 Gene3D - 805 933 IPR036426 -
Cma13g00691 1614 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 210 IPR036426 -
Cma13g00691 1614 CDD B_lectin 30 145 IPR001480 -
Cma13g00691 1614 SUPERFAMILY Protein kinase-like (PK-like) 465 753 IPR011009 -
Cma13g00691 1614 SMART ntp_6 343 417 IPR003609 -
Cma13g00691 1614 SMART ntp_6 1130 1203 IPR003609 -
Cma13g00691 1614 Pfam Domain of unknown function (DUF3403) 1569 1614 IPR021820 GO:0004674
Cma13g00691 1614 ProSiteProfiles PAN/Apple domain profile. 334 418 IPR003609 -
Cma13g00691 1614 ProSiteProfiles Protein kinase domain profile. 482 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00691 1614 Gene3D Phosphorylase Kinase; domain 1 457 557 - -
Cma13g00691 1614 SUPERFAMILY Hairpin loop containing domain-like 358 414 - -
Cma13g00691 1614 Pfam PAN-like domain 1129 1189 IPR003609 -
Cma13g00691 1614 Pfam PAN-like domain 343 403 IPR003609 -
Cma13g00691 1614 CDD STKc_IRAK 488 754 - -
Cma13g00691 1614 SMART blect_4 27 145 IPR001480 -
Cma13g00691 1614 SMART blect_4 814 935 IPR001480 -
Cma13g00691 1614 SUPERFAMILY alpha-D-mannose-specific plant lectins 856 1000 IPR036426 -
Cma13g00691 1614 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 6 784 - -
Cma13g00691 1614 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 791 1595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00504 Cma-Chr3:4936160 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma07g00288 Cma-Chr7:1281330 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma13g00687 Cma-Chr13:6295714 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma13g00691 Cma-Chr13:6304253 Cma16g00815 Cma-Chr16:4512975 6.25E-155 dispersed
Cma13g00693 Cma-Chr13:6320848 Cma13g00691 Cma-Chr13:6304253 7.81E-52 dispersed
Cma18g00235 Cma-Chr18:1252604 Cma13g00691 Cma-Chr13:6304253 4.46E-24 dispersed
Cma18g00332 Cma-Chr18:1779036 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma18g00333 Cma-Chr18:1785097 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma18g00334 Cma-Chr18:1791671 Cma13g00691 Cma-Chr13:6304253 1.12E-52 dispersed
Cma13g00689 Cma-Chr13:6299756 Cma13g00691 Cma-Chr13:6304253 0 proximal
Cma13g00690 Cma-Chr13:6301274 Cma13g00691 Cma-Chr13:6304253 4.53E-176 tandem
Cma13g00691 Cma-Chr13:6304253 Cma13g00692 Cma-Chr13:6320183 7.83E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69008 PF07714 PK_Tyr_Ser-Thr 3.60E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00691 - - cpep:111783520 2126.67