Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00694 ATGATGAAAATTTGGCATCATTTGCTACGGGGGAAGCTGGTAGATGGACAAGAAATAGCAGTAAAGAGGCTTTCCAGGACCTCAGGACAAGGGCTTGAAGAGTTTACAAATGAAGTAATGGTGATCTCGAAACTACAACATAGAAATCTTGTGCAGCTCTTTGGGTGTTGCGTGGAGGAAGAAGAAAGGATGCTTAGATTCAATCATTTTTGGGATTCACGACTAACAATCATTCCTACCGCATGGAAGTTATGGTTAGAGGCTAATGTAGTTGCTTTGATTGATCAAACAATGTCTAAACTGCATCATGAAGCAGAGATTTTGAGGTGTATTCATGTGGGGCTCTTGTGTGTTCAAGAATTTGCAAACGACATATCAAATATAACGACAATTCTTTCAATGCTTCACAATGAGATTACTGATTTTCCGATGCCAAAACAACCTGGATTTAGTAGCAGCAACCAAATTGAGATTCGTATCGAGAGATTCGAACAAAATCATCTTGAAACTTTCGACATCTTGAAAGCAGGACAGTCCATTAACGACACCCAAGTAATTGTCTCAGCCGGCAACAAGTTTGAATTGGGGTTCTTCACTGACCCAAAGCCCTCCAATTTCAAGTATTTAGGAATATGGTACAAGGAAATTCCTGACGTTGTCGTTTGGGTGGCGAACAGAGACAACCCAATTGTAAACTCCTCTGCCACTCTAAAATTGAATGGCGATGGAAACTTAATTCTAGTCAATCAAACAGGGTCAGCTTTTTGGACTTCGAATAATCCGATTGTATCAGTTCAAGATCCTGTTGCGCAGCTTTTGGATTCAGGTAATTTGGTGCTGAGAGATTCAAATTCAGGGTCTGAAGATTACGCGTGGCAGAGTTTCGATTATCCCTTTGATACTCTGTTATCAGGCATGAAGCTCGGGTGGGACTCCAAGTCGGGGTTGAACCGAAAGCTAATATCAAGGAAAAATCCAAGCGATTTGTCGTCTGGAGAACTCAGTTATGGCGTTAACATAGATGGGCTTCCTGAACTTGTTGTTCGTAAAGGAAACAAGACGATTTTCAGGGGGGGGCCATGGTTTGGTGATGGGTTTGCCAGAGCTCGCTCTGAGAGAGCGAATTTCATCTATAATGCTTCTTTTGAGATAACATATTCATATGATTCTCCGAATAGTGAACCTTGGAGAGCTGTGTTGGATCCAGGTGGGTTTGTTATACACTCCGAGTGGAGCGGCGTGGACAGAGCATGGAAGAAATTATACACGTTTGAAGGATCAGGCTGCAACGATTACGAATTATGTGGAAATTTTGGTCTTTGTAATTCTGTTTTATTAGCAAATTGCGATTGTTTAGATGGGTTTGAACAAAAATCTGCCCAAAACTTCTCAGATGGGTGCGTGAGAAAGGATGAAAAAACCTGCAGAGCAGGGGAGGGATTTAAGAAGATAAGCGATGTAAAATTGCCAGAATCAACAGGGAACTTGGTGAAAATCAAAGTGGGTATTCAAAATTGCGAGAAGGAATGCTTGAATGATTGTTCTTGCTTGGCGTATGGCACACTGGATCTTCCTAATGTTGGCCCAACCTGCGTCACCTGGTTTGACAGATTACTTGATGTTAGACGTGTTCGTGATCCTGGAACTGGAGATGGCCTCTTTGTGAGAGTGGCCGCTTCAGAATTAGAATCGAGTACTGGGAAGCGTACAGTTCTGGTGGTTGTGGGTACCATATCAGCAATGATCTTCTTCGCGTTAATCAGCTGTTTTATCATTAGGAGTATAAGAAGAAGAGGTAGAGATAATGGAGTTGCAATCACTGAGGATCTAGGAACACTCCCAACCGGGCAAGAAATTGCGGTGAAGAAACTAGCAGAAAGCTCCCATCAAGGGCAACAGGAGTTTAAAAATGAGGTCCTATTCGTTTCCCAGCTTCAACATCGAAACCTTGTCAAGCTTCTTGGTTTCTGCATCCACAGGGAAGAAACATTACTTATTTATGAATACATGCCAAACAAAAGCTTGGACTACTTCCTTTTTGATGACCAAAGACGTTCGGTACTTAACTGGACAATGAAAAAGGATATCATAATTGGCATAGCTAGAGGACTTCTTTATCTCCATCGAGATTCAAGACTCCGAATAATTCATCGAGATCTTAAAGCGGCTAATATTTTATTAGATGGTGAAATGAAGCCAAAAATTTCAGACTTTGGCATTGCGCGTATGTTTGGTGAAGATCAAATGGAAACAAAAACGCAAAGAGTTGTTGGGACATATGGCTACATGTCTCCGGAATATGCAATAGATGGTTGTTTTTCATTTAAATCCGATGTTTATAGCTTTGGAGTTTTGGTTTTAGAAATAGTTAGCAGCAAGAAGAACAAAGGATTTTTTCACTCCGAGCATCAACTGAATCTTCTCGGACATGCATGGAAGCTTTGGAATGAAGAAAAAGCGTTGGAGTTAATTGATGGAGAGGTGGGTGATCAAATGCAAGAACATGAAGCACTAAAATACATAAATATTGGACTTTTATGTGTTCAAGGACGCCCGAAAGATAGACCCATTATGTCATCTGTGCTTTCCATGTTAGAAAGTGATACCATGGAGTTGATTCACCCAAAACAACCTGGGTTCTATGAGGATAGATTTGTGTTGTCTGATTTTGATCCATTGTTAGATCATAAATCGACTTCTACTTCGAATAATGTTACTATTACATTGCTAGATGACGGTCCTTTATTCATCCCAAGAACATCTCTGGCTTGCCATGCAGAGATGGGGTACAACCAAATTTCATATCAACCCATTTTCTATCTCAGCCACACAAGAGGTTGGGATTGGATTGCTGGTTGTCCCATCGGTTGGAGAATGAAATAG 2883 41.03 MMKIWHHLLRGKLVDGQEIAVKRLSRTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVEEEERMLRFNHFWDSRLTIIPTAWKLWLEANVVALIDQTMSKLHHEAEILRCIHVGLLCVQEFANDISNITTILSMLHNEITDFPMPKQPGFSSSNQIEIRIERFEQNHLETFDILKAGQSINDTQVIVSAGNKFELGFFTDPKPSNFKYLGIWYKEIPDVVVWVANRDNPIVNSSATLKLNGDGNLILVNQTGSAFWTSNNPIVSVQDPVAQLLDSGNLVLRDSNSGSEDYAWQSFDYPFDTLLSGMKLGWDSKSGLNRKLISRKNPSDLSSGELSYGVNIDGLPELVVRKGNKTIFRGGPWFGDGFARARSERANFIYNASFEITYSYDSPNSEPWRAVLDPGGFVIHSEWSGVDRAWKKLYTFEGSGCNDYELCGNFGLCNSVLLANCDCLDGFEQKSAQNFSDGCVRKDEKTCRAGEGFKKISDVKLPESTGNLVKIKVGIQNCEKECLNDCSCLAYGTLDLPNVGPTCVTWFDRLLDVRRVRDPGTGDGLFVRVAASELESSTGKRTVLVVVGTISAMIFFALISCFIIRSIRRRGRDNGVAITEDLGTLPTGQEIAVKKLAESSHQGQQEFKNEVLFVSQLQHRNLVKLLGFCIHREETLLIYEYMPNKSLDYFLFDDQRRSVLNWTMKKDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDGEMKPKISDFGIARMFGEDQMETKTQRVVGTYGYMSPEYAIDGCFSFKSDVYSFGVLVLEIVSSKKNKGFFHSEHQLNLLGHAWKLWNEEKALELIDGEVGDQMQEHEALKYINIGLLCVQGRPKDRPIMSSVLSMLESDTMELIHPKQPGFYEDRFVLSDFDPLLDHKSTSTSNNVTITLLDDGPLFIPRTSLACHAEMGYNQISYQPIFYLSHTRGWDWIAGCPIGWRMK 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6322162 6327534 + CmaCh13G006940.1 Cma13g00694 306521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00694 960 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 611 910 - -
Cma13g00694 960 Pfam Protein tyrosine and serine/threonine kinase 15 65 IPR001245 GO:0004672|GO:0006468
Cma13g00694 960 Pfam Protein tyrosine and serine/threonine kinase 616 864 IPR001245 GO:0004672|GO:0006468
Cma13g00694 960 Gene3D - 168 295 IPR036426 -
Cma13g00694 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Cma13g00694 960 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 69 - -
Cma13g00694 960 ProSiteProfiles Bulb-type lectin domain profile. 171 293 IPR001480 -
Cma13g00694 960 CDD PAN_AP_plant 476 558 - -
Cma13g00694 960 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 169 598 - -
Cma13g00694 960 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 72 154 - -
Cma13g00694 960 Pfam PAN-like domain 475 541 IPR003609 -
Cma13g00694 960 SMART serkin_6 590 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00694 960 ProSiteProfiles PAN/Apple domain profile. 475 558 IPR003609 -
Cma13g00694 960 Pfam S-locus glycoprotein domain 356 458 IPR000858 GO:0048544
Cma13g00694 960 Gene3D Phosphorylase Kinase; domain 1 3 68 - -
Cma13g00694 960 Gene3D Phosphorylase Kinase; domain 1 594 669 - -
Cma13g00694 960 Gene3D Transferase(Phosphotransferase) domain 1 670 876 - -
Cma13g00694 960 Pfam D-mannose binding lectin 220 324 IPR001480 -
Cma13g00694 960 CDD B_lectin 178 298 IPR001480 -
Cma13g00694 960 SUPERFAMILY alpha-D-mannose-specific plant lectins 220 326 IPR036426 -
Cma13g00694 960 ProSiteProfiles Protein kinase domain profile. 590 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00694 960 SUPERFAMILY Protein kinase-like (PK-like) 613 883 IPR011009 -
Cma13g00694 960 SMART blect_4 177 298 IPR001480 -
Cma13g00694 960 SUPERFAMILY Protein kinase-like (PK-like) 11 68 IPR011009 -
Cma13g00694 960 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 169 598 - -
Cma13g00694 960 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 72 154 - -
Cma13g00694 960 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 611 910 - -
Cma13g00694 960 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 69 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00694 Cma-Chr13:6322162 Cma18g00333 Cma-Chr18:1785097 1.17E-11 dispersed
Cma13g00694 Cma-Chr13:6322162 Cma13g00695 Cma-Chr13:6328597 4.94E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69009 PF07714 PK_Tyr_Ser-Thr 6.20E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00694 - - cmo:103489252 1205.66