Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00695 ATGGGAGAAGAACTGATTTGCAGGTGGAAGCTTTCAGCTTTTCTCTTCCTCTGGGCGACTATAGCTCTGTTTCCAAGAAAATCATTAGCAATCGATAGCATAAAAGCAGGGGAATCAGTTAATGGTAGTACCCAGATATTAGTTTCAGCTGCACAGAACTTTGTGTTGGGAATCTTCAATCCCCAAGGCTCCAAATTTCAGTATTTGGGAATATGGTACAAAAACATCCCACAAACTGTCGTGTGGGTCGCAAACAGAGATAACCCACTTGTAAATTCCTCTGGAAGATTAACAGTCAATGGAGAAGGAAAGATTACTCTGCTCAATGAAACAGGGGGAGTTTTATGGTCGATCCCATCTCCAGGAAAAGTGGAACAACCAGTCGTTCAGCTGCTAAACACAGGTAATTTGGTGTTAAGAGAATCTGGGTCGGAGAATTATCTGTGGCAGAGTTTTGATTACCCCTCTGATACTCTGTTACCGGGCATGAAACTCGGTTGGGATTCGAAAACCGGTATGAACCGGAAGTTAACGTCATGGAAAAGCACGAACGATCCGTCGTCTGGGGATTTCACTTATAGTGTGGAGATGGATGGGCTTCCCCAATTTGTAGTTCGCAGAGGACCGATCACAACTTTTCGAAGCGGCCCATGGTACGGCAATGGGTTTAGTGGGTCTGGTCCACTCAGAAAGACCGCAATTTATTTTCCAAAGTTCACTTATAATGCCCATGAAGCCTTTTATTCATATGATGCTGGGAACGACATCTCCGTAAGACTGGTACTGAACGCGGCTGGGTTATTTCAGCAGTTTTACTGGGTCGATGATGGAAAATATTGGTACACTCTGTATACATTACCAGGAGATCGCTGCGATGTCTATGGATTCTGTGGGGATTTTGGCGTTTGCACCTTTTCCCTCACAGCAGAATGCGATTGCATGGCTGGGTTTGAACCCAAATCGCCCGATGATTGGGAGAAGTTTAGATGGTCGGATGGCTGCGTTAGAAGGGACAATAGAACGTGCGGAAATGGAGAGGGGTTTAAAAGAATCAGCAATGTGAAGTTGCCTGATTCTTCAGGGTATTTGGTGAATGTTAATACGAGCATCGATGATTGCGAGGCGACGTGCTTGGACAACTGCTCTTGCTTAGCCTATGGATTAATGGAGCTTCCAACAGGCGGCTATGGCTGCGTTACCTGGTTTCATAAACTGAGGGATGTTAAATTTGTTCTTCAAAATGGGCAAGATCTTTATGTGAGAGTGGCGGCATCAGAATTAGACTCAACCAACAAGAAGCTTACGGTTGCAATTAGTGTGTCTGTGGCTTCATTTCTGGGCTTGTTGGTTCTTGTGATTTGCTTTATCCTTGGGCGTAGAAGGAAAGTTAGAGGAGGCAATATGATCTCCCCTGAGATCACTTTAGGAGAGATTCACTCTCAAGAAAAGGAAGTTGAGATGCCAATCTATGATTTTAGGACGATTGAGATTGCCACAAATAGTTTCTCTTTTTGGAATAAGATAGGTGAAGGTGGTTTTGGACCAGTTTACAAGGGAAAGCTCTCTTGTGGGCAGGAGATTGCAGTAAAGAGGCTAGCAGAGGGCTCTGGCCAAGGGAAAAGTGAGTTCAGAAACGAGGTTTTGTTGATCTCACAACTTCAACATAGAAATCTTGTCAAGCTGCTTGGTTTCTGCATTCACCAACAAGAAACATTGCTAGTCTATGAATATATGCAAAACAAAAGCTTAGACTATTTCCTCTTTGATGATAAGAGGCGAGCTTCACTCAAATGGCAAAAGAGATTGGACATCATAATTGGGATAGCTCGAGGACTTCTTTACCTTCACCGAGATTCAAGGCTGAGAATAATACACAGGGATCTCAAAGTAAGTAATATATTACTAGACAACGAAATGAATCCGAAAATTTCAGACTTTGGAATGGCACGCATATTTGAGGAAGATCAAACTATGACCAAAACCAAAAGAGTTGTCGGGACCTATGGTTATATGTCTCCTGAATATGCACTAGACGGATGTTTTTCATTGAAATCTGACGTATTCAGCTTCGGGGTAATTGTTTTGGAAATCGTTAGTGGTAAGAAGAACAGAGGGTTTTTCCATGAAGATCATCAACTAAATCTTCTTGGACATGCATGGAAGCTTTGGAACGAGGGAAATGGTTTGGAGTTGATGGATGCAGCCTTGGGGGATGAATTCCAAGGCTCTGAAGCACTGCGATGCATTCAAGTAGGCCTTTTGTGTGTCCAACAGAGCTCCGATGAAAGGCCGACAATGTGGTCAGTACTTTCAATGTTGGAGAGTGAAGACATGTTGTTGTCTCAGCCTAAACAACCTGGATTTTACATGGAAAGAATGTTTTCCAAGACTGATAAATTGCCGGCCGAAACCTCCACTTCCAATGAAGTCACTGTTACACTGCTACATGGTCGTTAG 2457 43.35 MGEELICRWKLSAFLFLWATIALFPRKSLAIDSIKAGESVNGSTQILVSAAQNFVLGIFNPQGSKFQYLGIWYKNIPQTVVWVANRDNPLVNSSGRLTVNGEGKITLLNETGGVLWSIPSPGKVEQPVVQLLNTGNLVLRESGSENYLWQSFDYPSDTLLPGMKLGWDSKTGMNRKLTSWKSTNDPSSGDFTYSVEMDGLPQFVVRRGPITTFRSGPWYGNGFSGSGPLRKTAIYFPKFTYNAHEAFYSYDAGNDISVRLVLNAAGLFQQFYWVDDGKYWYTLYTLPGDRCDVYGFCGDFGVCTFSLTAECDCMAGFEPKSPDDWEKFRWSDGCVRRDNRTCGNGEGFKRISNVKLPDSSGYLVNVNTSIDDCEATCLDNCSCLAYGLMELPTGGYGCVTWFHKLRDVKFVLQNGQDLYVRVAASELDSTNKKLTVAISVSVASFLGLLVLVICFILGRRRKVRGGNMISPEITLGEIHSQEKEVEMPIYDFRTIEIATNSFSFWNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGKSEFRNEVLLISQLQHRNLVKLLGFCIHQQETLLVYEYMQNKSLDYFLFDDKRRASLKWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARIFEEDQTMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVIVLEIVSGKKNRGFFHEDHQLNLLGHAWKLWNEGNGLELMDAALGDEFQGSEALRCIQVGLLCVQQSSDERPTMWSVLSMLESEDMLLSQPKQPGFYMERMFSKTDKLPAETSTSNEVTVTLLHGR 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6328597 6332257 + CmaCh13G006950.1 Cma13g00695 306522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00695 818 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Cma13g00695 818 Pfam PAN-like domain 342 408 IPR003609 -
Cma13g00695 818 Pfam Protein tyrosine and serine/threonine kinase 504 703 IPR001245 GO:0004672|GO:0006468
Cma13g00695 818 CDD PAN_AP_plant 339 423 - -
Cma13g00695 818 Pfam D-mannose binding lectin 79 181 IPR001480 -
Cma13g00695 818 SMART blect_4 38 155 IPR001480 -
Cma13g00695 818 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 816 - -
Cma13g00695 818 CDD B_lectin 40 155 IPR001480 -
Cma13g00695 818 SMART serkin_6 502 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00695 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Cma13g00695 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Cma13g00695 818 CDD STKc_IRAK 508 774 - -
Cma13g00695 818 PIRSF SRK 3 818 IPR024171 GO:0004674
Cma13g00695 818 ProSiteProfiles Protein kinase domain profile. 502 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00695 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 816 - -
Cma13g00695 818 Gene3D Transferase(Phosphotransferase) domain 1 578 785 - -
Cma13g00695 818 SMART ntp_6 343 422 IPR003609 -
Cma13g00695 818 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Cma13g00695 818 Gene3D - 28 152 IPR036426 -
Cma13g00695 818 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Cma13g00695 818 Pfam Domain of unknown function (DUF3403) 775 818 IPR021820 GO:0004674
Cma13g00695 818 Gene3D Phosphorylase Kinase; domain 1 471 577 - -
Cma13g00695 818 SUPERFAMILY Protein kinase-like (PK-like) 483 774 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00906 Cma-Chr9:4507821 Cma13g00695 Cma-Chr13:6328597 0 dispersed
Cma12g01170 Cma-Chr12:9225475 Cma13g00695 Cma-Chr13:6328597 2.87E-112 dispersed
Cma13g00695 Cma-Chr13:6328597 Cma18g00332 Cma-Chr18:1779036 0 dispersed
Cma13g00693 Cma-Chr13:6320848 Cma13g00695 Cma-Chr13:6328597 1.75E-33 proximal
Cma13g00694 Cma-Chr13:6322162 Cma13g00695 Cma-Chr13:6328597 4.94E-13 tandem
Cma13g00695 Cma-Chr13:6328597 Cma13g00696 Cma-Chr13:6334286 0 tandem
Cma13g00695 Cma-Chr13:6328597 Cma19g00948 Cma-Chr19:8421147 1.01E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69010 PF07714 PK_Tyr_Ser-Thr 4.90E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00695 - - bhj:120084118 1417.91