Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00696 ATGAATCCTCCTAATCCGACCGTCCTCATTTCACTGCTTTTAGTCACTTTTGTTGGCAGTTTCTTTACCGTCGCCACCGCCGCCGTCGCCGTCGCCGCCATAGATAATTCCAGTATTCACATCATCAAAGATGGAGATCGCTTGGTGTCCAGCAACGAGAATTTCGCTCTTGGGTTCTTCAGCTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTACAACACAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTAATCGACACCTCAGGAACCTTAGCCCTCGACCGTCATGGCAACCTCCTCGTTTACTCCCACACACAAACCATATCTCTCTGGTCTACAAACGCTACCCTCCGATCAAACGACGTGTCAGTTCAGCTTTGGAATACGGGAAATCTCGCCCTTGTTGAACGACAAAGCCGAAAGGTTATATGGCAAAGCTTTGATTATCCATCTGATGTTTTAATTCCGTACATGAAAATGGGGGTGAACCGGCGGACCGGGTTCAGCTGGTTCCTAACTTCTTGGAAGGCGCAAGACGACCCGGCAACTGGGAATTTCAGTTGCCGGATCAACCCGACTGGGTATCCGCAGCTGGTTTTGTACCAGGGGGATGTTCCATGGTGGCGGGGAGGGCCGTGGACAGGGCGGAGATGGGCCGGAGTACCTGAAATGACTAGGTCATTTATAATCAACACATCCTACATCGACAACGCCGAGGAGGTCTCCATAACAAACGGCGTCACGGTCGATACGGTTCTAATGAGAATGACTCTAGACGAATCCGGTTCGTTGCATCGGTCCACGTGGAACGAACAGGACCAAAAGTGGAACGAGTTTTGGTCGGCCCCGACCGAGTGGTGCGACAAGTACAGCCGGTGCGGTCCGAACTCTAACTGCGACCCGTACAACACGGAGCAGTTCCAATGCAAGTGCCTGCCGGGTTTCGAACCACGGTCCAACCATAATTGGTTCTTGAGAGATCCGTCGGGTGGGTGCATCAGGAAAAGGCCGAACGCCACGTGCGGGAGTGGAGAGGGTTTTGTGAAGGTGGAACGTGTGAAGGTTCCGGACTCCTCGACAGCACGTGCGGATAAGAGTATGAGTTTAGAAGCGTGCGAACAAGCGTGTATGAAGGATTGTAAGTGTACGGCTTACACGAGCGCAAATGAGACGACGGGGTTCGGGTGCGTGACATGGTATGGAGATTTGTTAGACACGCGGACCTATGCCAACGTGGGTCAAGATCTGTACGTAAGAGTTGATGCCGTTGAATTAGCTCAATATTCCCAAAAGTCAAATGGTCATCCATCCAAGAAGGTGATACCCATAGTCGTAGTGTGTTTCGTCGCATTGGTGCTACTCGTGGCCTCGCTAGTTTATTTATGGGAGCTCCTAAAAAAACGAAGGGAAAGGGAGAGACCACCGAGTTTCTCTGGTAACTTTGGAGACCCGCCAAGTACGAAGGAATTTGATGAAGGTAGAACAAGCTCAGATTTGCCTGTGTTTGACTTGGTCACTATAGTTAAGGCAACCGACAATTTTTGTTTTAATAACAAGCTTGGAGAAGGTGGCTTTGGGGCTGTTTATAAGGGAAAGCTTACAAATGGAGAGGAAATTGCAGTTAAAAGGCTAGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTCCAACATAGAAACCTCGTCAGAATTTTAGGGTATTGCGTTAAGAACAAAGAGAAAATGCTTGTGTATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTTAATTGGAGAAGACGCTTTGAAATCATTTGCGGTGTCGCTCGAGGGATGCTATATCTTCATCAAGATTCTAGATTGAAAATCATTCATCGAGATTTGAAGGCGAGCAATATACTATTAGATGCTAATTTGAATCCCAAGATTGCGGATTTTGGTATGGCAAGAATATTTGGTCAAGACCAAATTCAAGCGAACACAAATCGAATTGTCGGAACGTATGGTTATATGTCACCTGAATACGCAATGGAAGGTCTGTTCTCAATGAAATCAGATGTATATAGCTTTGGAGTTTTGGTGTTGGAGATAATTACGGGGAAAAAGAACACCAACTACGATTCCTCGTACTTAAACTTGGTCGGACATGTTTGGGAGCTGTGGAAATTGGAGAAGGCAATGGAATTGGTAGACCCAAGTTTGGAAGAATCAAGCAGTGGATATGAAGTGATGAGATGCCTCCAAATTGGGCTGTTGTGTGTGCAGGAGGATCCGACAGATCGTCCGACCATGTCGAATGTGGTGTTCATGTTGGGCAACGAAGTGGGTGTTCCTTCTCCAAAGAAACCTGCTTTTATTTTGAAGAGGAAATACAACAGTGGAGATCCATCCACCAGTACAGAAGGAGCCAACTCTGTAAATGACCTAACAATTTCCATAATCAATGCTCGTTAA 2517 46.8 MNPPNPTVLISLLLVTFVGSFFTVATAAVAVAAIDNSSIHIIKDGDRLVSSNENFALGFFSFNNSTTRRYVGIWYNTIPQLTLVWVANRNQPLIDTSGTLALDRHGNLLVYSHTQTISLWSTNATLRSNDVSVQLWNTGNLALVERQSRKVIWQSFDYPSDVLIPYMKMGVNRRTGFSWFLTSWKAQDDPATGNFSCRINPTGYPQLVLYQGDVPWWRGGPWTGRRWAGVPEMTRSFIINTSYIDNAEEVSITNGVTVDTVLMRMTLDESGSLHRSTWNEQDQKWNEFWSAPTEWCDKYSRCGPNSNCDPYNTEQFQCKCLPGFEPRSNHNWFLRDPSGGCIRKRPNATCGSGEGFVKVERVKVPDSSTARADKSMSLEACEQACMKDCKCTAYTSANETTGFGCVTWYGDLLDTRTYANVGQDLYVRVDAVELAQYSQKSNGHPSKKVIPIVVVCFVALVLLVASLVYLWELLKKRRERERPPSFSGNFGDPPSTKEFDEGRTSSDLPVFDLVTIVKATDNFCFNNKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNKEKMLVYEYLPNKSLDSFIFDESKRALLNWRRRFEIICGVARGMLYLHQDSRLKIIHRDLKASNILLDANLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSMKSDVYSFGVLVLEIITGKKNTNYDSSYLNLVGHVWELWKLEKAMELVDPSLEESSSGYEVMRCLQIGLLCVQEDPTDRPTMSNVVFMLGNEVGVPSPKKPAFILKRKYNSGDPSTSTEGANSVNDLTISIINAR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6334286 6337887 + CmaCh13G006960.1 Cma13g00696 306523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00696 838 SMART blect_4 39 159 IPR001480 -
Cma13g00696 838 ProSiteProfiles PAN/Apple domain profile. 350 430 IPR003609 -
Cma13g00696 838 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 33 835 - -
Cma13g00696 838 ProSiteProfiles Protein kinase domain profile. 523 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00696 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Cma13g00696 838 PIRSF SRK 4 838 IPR024171 GO:0004674
Cma13g00696 838 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Cma13g00696 838 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Cma13g00696 838 Gene3D Transferase(Phosphotransferase) domain 1 599 797 - -
Cma13g00696 838 SUPERFAMILY Protein kinase-like (PK-like) 501 792 IPR011009 -
Cma13g00696 838 Gene3D - 37 156 IPR036426 -
Cma13g00696 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 222 IPR036426 -
Cma13g00696 838 ProSiteProfiles Bulb-type lectin domain profile. 33 156 IPR001480 -
Cma13g00696 838 Gene3D Phosphorylase Kinase; domain 1 497 598 - -
Cma13g00696 838 Pfam Protein tyrosine and serine/threonine kinase 525 790 IPR001245 GO:0004672|GO:0006468
Cma13g00696 838 CDD STKc_IRAK 529 792 - -
Cma13g00696 838 SMART serkin_6 523 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00696 838 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cma13g00696 838 Pfam PAN-like domain 350 415 IPR003609 -
Cma13g00696 838 SMART ntp_6 351 429 IPR003609 -
Cma13g00696 838 PANTHER - 33 835 - -
Cma13g00696 838 CDD PAN_AP_plant 349 429 - -
Cma13g00696 838 MobiDBLite consensus disorder prediction 482 504 - -
Cma13g00696 838 CDD B_lectin 41 159 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01169 Cma-Chr1:8503318 Cma13g00696 Cma-Chr13:6334286 2.36E-138 dispersed
Cma04g00066 Cma-Chr4:312376 Cma13g00696 Cma-Chr13:6334286 2.24E-101 dispersed
Cma13g00696 Cma-Chr13:6334286 Cma18g00332 Cma-Chr18:1779036 0 dispersed
Cma13g00695 Cma-Chr13:6328597 Cma13g00696 Cma-Chr13:6334286 0 tandem
Cma13g00696 Cma-Chr13:6334286 Cma20g00649 Cma-Chr20:3000088 6.55E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69011 PF07714 PK_Tyr_Ser-Thr 1.10E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00696 - - cmos:111434312 1568.52