Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00697 ATGGACGATGAATTTCCACCTGGGATTTGCGGTCGGGAGTTGTGGGATACAACCAAAACCCTGTTCTCGCCGGCGGCCGCCAATCCCTCGCCGTGTTCCATCGGTGACACCACCTTCTTGATTGATCCAACCGTTCGAACGCCTTCCAATTGGAACCAAAATTTTCTTGGAGATGATGGACAAAGAGTTGACACCACTTTGATGGTGGATTATGATCACCAAGAAACTAATGCATCCGAGGAGCCACAAAATCCTTCCATTTTCAACGCCGATCATGATTCTATGTTCTTAATGGGCCAAACCCATTCCAACTTTTACGATAATATTGTGACAACTACAAGCCAAGGGTTACCGATGGCTTACCCTTTTGGGATGATCTCCAATGGGTACACTCCAACGTTGTTGCCAAGTTCATTGGATCAACCGAAACAGTTTCTTGTCAACAACCGGACCAATAATAGTTCTTGTCAGCCTATGTTTGAAACCCTGAATTTCACAACAAAGCTTATTAGTTGGGATGAAGTTGTTCGAGATTCGAGTCGAGTCGAGATGAAAAACAAAAGTAATGAAATTACGACAATCAAAAGGCCAAGAAATGACATGTCATCCTCATTACCCACTTTTAAGGTTCGAAAAGAGAAGCTTGGCGACAAGATCACAGCGCTCCAACAGCTTGTTTCTCCCTTTGGAAAGACTGATACTGCATCAGTTCTACATGAAGCAATCGAGTACATCAAGTTTCTTCACGATCAAGTTCGTGTTTTGAGTACTCCATATATGGAAATGGGCGAGCAGGAGCAAGAGCAACAGGTAAGAAATTATGATGGCGGGCAGCTTCTTAAGGAAGAATTGGAAGAGAATAAGAAACAAGATCTAACAAGTAGAGGACTTTGTCTGGTGCCAATTCCAACTACAGTTGCATTAGCAAATGGTAATAATACACTTGATTTCTGGTCGCCCACTTTTGGAGGAACTTTTAGGTAA 984 42.99 MDDEFPPGICGRELWDTTKTLFSPAAANPSPCSIGDTTFLIDPTVRTPSNWNQNFLGDDGQRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMAYPFGMISNGYTPTLLPSSLDQPKQFLVNNRTNNSSCQPMFETLNFTTKLISWDEVVRDSSRVEMKNKSNEITTIKRPRNDMSSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEQEQQVRNYDGGQLLKEELEENKKQDLTSRGLCLVPIPTTVALANGNNTLDFWSPTFGGTFR 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6338777 6340984 - CmaCh13G006970.1 Cma13g00697 306524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00697 327 CDD bHLH_AtbHLH_like 205 256 IPR045239 -
Cma13g00697 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Cma13g00697 327 Gene3D - 209 274 IPR036638 GO:0046983
Cma13g00697 327 PANTHER TRANSCRIPTION FACTOR BHLH103 67 308 - -
Cma13g00697 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 308 - -
Cma13g00697 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 264 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00697 Cma-Chr13:6338777 Cma16g00839 Cma-Chr16:4812754 1.71E-43 dispersed
Cma13g00697 Cma-Chr13:6338777 Cma03g00508 Cma-Chr3:4950547 4.68E-53 wgd
Cma13g00697 Cma-Chr13:6338777 Cma07g00291 Cma-Chr7:1294348 5.21E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00697 - - cmos:111434066 597.816