Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00706 ATGGCATCGTCTGAATTCACGGATTGGGTGTTCGATTACGGCGCGATTGAGGACATCCCTGTCCCCGGCGGCGACCTACCTTCACTGGATCTTCCTGCTTTCACTTTGCCTTCTCGCGATTTCACTGCCTCCTTCAGGGCAGATTTTGATGAGCAACTTGAAATGCCAGACGACATAAAGGAATCTGGATCCAGAAAAAGGATGAGCAGCTCTGGATCAAATGCATTTGGGTCCAAGGCACATAAAGAGAAAATGCGAAGGGATAAACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACACCTAAGGGATGAGGCTCAGAAGCTTAAGGAATCTAATGAGACTTTTCTGGAGAAGATCAATGAAATGAAGGCTGAAAAGAGTGAACTACGAGACGAGAAACAGAGGCTGAAAGAAGCAAAAGACAACCTTGAACAGAAAATGAAGGCGTTCAATACACAACCAAGCTTCTTGCCTCACCCTCCTGCATTTTCTTCTCCAAATCAGGTTGTTGGAGGCAAGTTGGTACCTGTGATCGGATATCCCGGAGTATCGATGTGGCAGTTCATGTCTCCGGGCACCATCGATACATCGCAAGACCACGTTCTTCGGCCACCAGTTGCCTGA 696 46.55 MASSEFTDWVFDYGAIEDIPVPGGDLPSLDLPAFTLPSRDFTASFRADFDEQLEMPDDIKESGSRKRMSSSGSNAFGSKAHKEKMRRDKLNDRFLELNSILNHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSELRDEKQRLKEAKDNLEQKMKAFNTQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGTIDTSQDHVLRPPVA 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6387711 6389687 + CmaCh13G007060.1 Cma13g00706 306533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00706 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Cma13g00706 231 PANTHER BHLH TRANSCRIPTION FACTOR 3 231 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma13g00706 231 SMART finulus 80 131 IPR011598 GO:0046983
Cma13g00706 231 MobiDBLite consensus disorder prediction 52 85 - -
Cma13g00706 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 153 IPR036638 GO:0046983
Cma13g00706 231 CDD bHLH_AtILR3_like 79 154 - -
Cma13g00706 231 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 231 - -
Cma13g00706 231 Pfam Helix-loop-helix DNA-binding domain 79 125 IPR011598 GO:0046983
Cma13g00706 231 Coils Coil 122 177 - -
Cma13g00706 231 Gene3D - 78 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00706 Cma-Chr13:6387711 Cma16g00846 Cma-Chr16:4970716 3.77E-82 dispersed
Cma01g01152 Cma-Chr1:8424445 Cma13g00706 Cma-Chr13:6387711 2.30E-74 wgd
Cma13g00706 Cma-Chr13:6387711 Cma18g00230 Cma-Chr18:1237799 1.26E-120 wgd
Cma13g00706 Cma-Chr13:6387711 Cma20g00638 Cma-Chr20:2971125 5.31E-71 wgd
Cma13g00706 Cma-Chr13:6387711 Cma09g00924 Cma-Chr9:4612273 1.01E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36113 PF00010 HLH 7.60E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00706 - - csv:101208894 398.667