Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00708 ATGAACTTTAAAAAATTCCTTCTCTCTCCATCCACGGCCACCGCCATCCTCCATCGACGCTTGGCCTGGCCTCACGATTTCAAGGCTTTGTGGAGTAACAAAGTAATGGGTGGTTCAAGATTTATATGTTCCATTACTCTGAGTTTGTTGTTTTTGGCGCTGATTGGTCACCCTCTGGCATTTGCTCAGCCAAGATTGTTACACTTTATCTGTGTCGACGGAGGCAATAGCAACCATACAACTGATGGGGCTGCCTACAAAGCCAATCTAGAACACCTCCTCTCCACCTTCACCACCGACCATCAAATTGAGTATGGCTTTTACAACTTCTCTTACGGCGGCGAAAACAGTGCATACGCAATCGGACTCTGCAGGGGGGACATTTCGGCGGAGGCTTGCCGGGGATGCCTCAATAACTCCAGAGATATTCTCCTTACACGGTGTGAGATCCAGAAGGAAGCGCTCGGATGGTACGATGCCTGCATGCTCCGTTATTCCGACCGCCCCATCTTGGGGTCCATGGAAGTTTCACCGCCCGCCTTTCTGTGGAACACGATGAAGGCGTCGGATCCGGAAGGATTCACCCAGGCCGCCAGGAATCTGATAGTGAGTCTCATAGGCCCAACCTCGGCCGGCGACTCCCGTATGAAGTTTGCGGTGGGGAACGCAACGCTTCCAAATTTGCCCACAATTTATGGCTCAGCGCAGTGCACCCCAGATTTGTCTCCGCGGAAGTGCAACGAATGCTTGTCTGGGGCTCTGCCTCTAATCCAAGATTGCTGTGATGGAAAGCGAGGGGGTAGGGTTCTTAGACCCAGTTGTAATTTTCGATATGAGACCTACTCTTTCATTCAATCGCTGCTGCCGCCGCCGCCGCCGCCGCCGCCCACCCTCTCGCCCTTTCCACCGCCACCATCCCCTCCTCTTTTACTTCACAGAACCACCAACGGAAACAAAAGCAGCTACTCTGCAACTTTCATAGCTATCGTTGTGCCTATTGCTGCTGTTGCAATTTTAGCATTAATGATCAGCATCTACATCTTTCTGAGAAAATGTTGGCCAAAACCCAGTGGAGAAAACTGTCAATCCGAGGAAGAAACTACGACAGTGGGGTTCTTACAGTTCGATTTCCACACCATTAGAACAGCAACAGATGAATTTTCAGACGAAAACAAACTTGGGGAAGGTGGGTTTGGAGCTGTTTACAAGGGGAAGCTTCCAAACAAACGAATCGTAGCAGTCAAACGGCTTTCTAAGGTTTCAGGGCAGGGAGATGATGAATTTAAGAACGAACTCCTTTTGTTATCTAAGCTTCATCATCGGAATTTAGTTAGGCTTTTGGGTTTCTCCTTCAAACAAAACGAAAAGCTTCTCATTTATGAGTTCTTGCAGAATGGAAGCCTTGAAAAATTCATTTTCGATCCTCTCAAGCGCCAAACTTTGAATTGGGCAATGCGCTACAAAATCATACAAGGCATCACTCGTGGACTCATTTATCTTCACGAAAATTCACGAATCAAAATTATTCATCGAGATCTTAAACCCAGTAATATTTTGTTGGATATAAACATGAATGCTAAAATTTCAGATTTTGGTACCGCAAGATTATTCGCGTCTGAACAAACTCGAGATGATACATCCACAATAATCGGCACTTTTGGATATATGGCTCCAGAATACGCAAGACACGGTCAATTCTCATCAAAGTCGGACGTGTTTAGCTTTGGTGTTCTAGTTTTAGAGATTGTGACTGGACGAAGAAATAACCGAGTCAATAGCTACAACGAGAATATCGAAGATCGTCTTATAAGCTCCGCATGGAGAAACTGGAGGGAAGGAACAGCGTTGAATATTGTAGATCCTTGTGTTGAAATTCGAAGTGAAATGATGAGGAATGAGGCGACAAGATGCATCCAGATTGGGTTACTCTGCATTCAAGAGAAGGTGTGTGAAAGGCCAACAATGGGTACCATCCTTCTCTTGCTTAACGGCGACTTGGCTGATTTTCCCACGCCCTCACAGCCTTCTTTCTTTATGAACACTAAGAACCCCCCAAGCTAA 2061 46.48 MNFKKFLLSPSTATAILHRRLAWPHDFKALWSNKVMGGSRFICSITLSLLFLALIGHPLAFAQPRLLHFICVDGGNSNHTTDGAAYKANLEHLLSTFTTDHQIEYGFYNFSYGGENSAYAIGLCRGDISAEACRGCLNNSRDILLTRCEIQKEALGWYDACMLRYSDRPILGSMEVSPPAFLWNTMKASDPEGFTQAARNLIVSLIGPTSAGDSRMKFAVGNATLPNLPTIYGSAQCTPDLSPRKCNECLSGALPLIQDCCDGKRGGRVLRPSCNFRYETYSFIQSLLPPPPPPPPTLSPFPPPPSPPLLLHRTTNGNKSSYSATFIAIVVPIAAVAILALMISIYIFLRKCWPKPSGENCQSEEETTTVGFLQFDFHTIRTATDEFSDENKLGEGGFGAVYKGKLPNKRIVAVKRLSKVSGQGDDEFKNELLLLSKLHHRNLVRLLGFSFKQNEKLLIYEFLQNGSLEKFIFDPLKRQTLNWAMRYKIIQGITRGLIYLHENSRIKIIHRDLKPSNILLDINMNAKISDFGTARLFASEQTRDDTSTIIGTFGYMAPEYARHGQFSSKSDVFSFGVLVLEIVTGRRNNRVNSYNENIEDRLISSAWRNWREGTALNIVDPCVEIRSEMMRNEATRCIQIGLLCIQEKVCERPTMGTILLLLNGDLADFPTPSQPSFFMNTKNPPS 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6393023 6395720 + CmaCh13G007080.1 Cma13g00708 306535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00708 686 SMART serkin_6 387 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00708 686 ProSiteProfiles Protein kinase domain profile. 387 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00708 686 Gene3D Transferase(Phosphotransferase) domain 1 463 668 - -
Cma13g00708 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Cma13g00708 686 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 78 682 - -
Cma13g00708 686 Gene3D Phosphorylase Kinase; domain 1 353 462 - -
Cma13g00708 686 Gene3D - 69 169 IPR038408 -
Cma13g00708 686 Gene3D - 180 283 IPR038408 -
Cma13g00708 686 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 78 682 - -
Cma13g00708 686 SUPERFAMILY Protein kinase-like (PK-like) 371 682 IPR011009 -
Cma13g00708 686 Pfam Salt stress response/antifungal 188 281 IPR002902 -
Cma13g00708 686 Pfam Salt stress response/antifungal 71 167 IPR002902 -
Cma13g00708 686 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Cma13g00708 686 CDD STKc_IRAK 393 664 - -
Cma13g00708 686 ProSiteProfiles Gnk2-homologous domain profile. 176 283 IPR002902 -
Cma13g00708 686 Pfam Protein kinase domain 388 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00708 686 ProSiteProfiles Gnk2-homologous domain profile. 68 170 IPR002902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00296 Cma13g00708 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00294 Cma-Chr7:1308083 Cma13g00708 Cma-Chr13:6393023 3.45E-49 dispersed
Cma13g00708 Cma-Chr13:6393023 Cma13g00711 Cma-Chr13:6409064 1.01E-155 dispersed
Cma13g00707 Cma-Chr13:6389767 Cma13g00708 Cma-Chr13:6393023 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69013 PF00069 Pkinase 4.10E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00708 - - cmax:111495425 1328.92