Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00725 ATGTTGGGAGGGCATGATTACGAAGAACATCATGATGAGGAGGACGTTGTTCTCCTGGAGATGACCCAGAAAAACTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGATGATCAGATGGAGAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACCCATTTCTTCACAATCCCACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTTCTTTAAGGAATGCCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTAGGGCTGGATCCCCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGTACCCAACTCAAGGCTCAACATGAACGCCATGAGAACGCAATCTTGAAGGCTCAAAACGAGAAACTACGAGCAGAGAACATGCGGTACAAGGAAGCTCTAAGCAACACCAGCTGCCCCAATTGTGGCGGCCCTGCGGCTCTCGGCGAGATGTCCTTTGATGACCAACATTTGAGGATCGACAATGCGCAGCTAAGGGATGAGATTGAGAGATTAAATTCAGTTGCTAGCAAGTTTGCTGGGAAGCCATGGGCTTCCCATTCTCGCATCCCGCCCTGCGCCCTTGATCTTGGGGTTGGCAGAGCATTGCAGCCGCCCCAAGCAGAGTTCTTGGGGGAAATTTATGGAGTTGGAGACATGTTGAAGTCTGTCACAACTGAAATTGATAAGCCAGTGATCGTTGAGCTTGCTGTTTCAGCCATGGAAGAACTTTGCAGAATGGCTCACGCAGGTGAACCCTTGTGGGTTCCTGGGGAAAACTCCATGGAAATGCTTAATGAAGATGAGTACCTCAGGACTTACTCTACGGGAATTGGCCCAAGAATTTTGGGGCTCAGCTTTGAAGCTTCAAGAGAAACTTCCATTGTTGCTTTCAATCATTTAAAACTTGTCGACATTCTCATGGACGTCAATCAGTGGTCAAACACATTTTGCGGGATTGTTTCGAGAGCGTTGACCCTCGAAGTTTTGTCAACGGGAGTCGGTGGCAACTATAATGGAGCTCTCCACGTCATGACGGCGGAGTTTCAAGTTCCTTCTCCTTTAGTTCCGACTCGAGAAAATTACTTTGTGAGATATTGTAAGCAGCAGACAGATCGTAGTTGGGCTGTGGTCGATGTCTCGCTAGACTATTTACGTCCCACTCCAACATCAAGGACTCGAAGAAGACCGTCGGGTTGCTTAATCCAAGAACTTCCCAATGGTTACTCAAAGATTATGTGGGTGGAACATGTTGAAGTGGATGATCGATCGGTACACAATTTGTACAAACGAGTGGTCACTTGTGGGCTTGCCTTCGGCGCCAAACGATGGGTCGCTACGCTTGATCGACAATGCCAACGCCTGACCAACTCCTCTGCTGCCAATATTCCTGCAGTAGACATATGCGTGGTAACCGGGCAAGAGGGGAGGAGGAGCGTAATGAAGCTAGCAGAGAGAATGGTTAGGAGCTTCTGCAGTGGCGTTGGAGCTGCTTCTGCACACAATTGGACAACATTATCCACAATTGATTCCGACCATGTTCGAGTCATGGCAAGAAAGAGTCTCGACGATCCGGGGCGACCTCCTGGAATTGTTCTAAATGCAGCAACTTCATTCTGGATTCCAATTCCCCCTAATAGGGTCTTCCATTTTCTTCGAGATCAAAACACTCGCAGTCAATGGGATGTTCTTTCAAATGGTGGGTTGGTCCAAGAAATGGCTCGCATTGGCAATGATCGCAACCCCGGAAACTGTGTGTCGTTGCTTCGTGTTAATAGTACAAACTCAAGCCAGAGCAACATGCTGATACTACAAGAGAGTTGCAGCGACATCAGTGGTTGCTACATAACATATGCACCAGTCGACACCGTCGCCATGAACATGGTGTTGAGCGGCGGAGACCCTGATTACGTTGCTCTGTTGCCGTCTGGATTCGCCATACTGCCTGATGGACCTAGTGGCCCCGATGCGCCAGCGGGAATTCTGGAGTTCGGGTCCGGTGGCTCCTTGTTGACAGTTGCATTTCAGATATTGGTGGATTCAGTGCCAACTGCCAAACTGTCTCTAGGATCGGTGGCGACGGTGAACAGCCTCATCAAGTGCACGGTCGAGCGGATTAGAGCTGCGGTCATGTGTGAGCATCCATGA 2187 49.43 MLGGHDYEEHHDEEDVVLLEMTQKNFETELEKFGEDDQMESSRSVKDAAMGEDPFLHNPTNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQLKAQHERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDDQHLRIDNAQLRDEIERLNSVASKFAGKPWASHSRIPPCALDLGVGRALQPPQAEFLGEIYGVGDMLKSVTTEIDKPVIVELAVSAMEELCRMAHAGEPLWVPGENSMEMLNEDEYLRTYSTGIGPRILGLSFEASRETSIVAFNHLKLVDILMDVNQWSNTFCGIVSRALTLEVLSTGVGGNYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQTDRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKIMWVEHVEVDDRSVHNLYKRVVTCGLAFGAKRWVATLDRQCQRLTNSSAANIPAVDICVVTGQEGRRSVMKLAERMVRSFCSGVGAASAHNWTTLSTIDSDHVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRSQWDVLSNGGLVQEMARIGNDRNPGNCVSLLRVNSTNSSQSNMLILQESCSDISGCYITYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPSGPDAPAGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAAVMCEHP 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6447191 6452527 + CmaCh13G007250.1 Cma13g00725 306552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00725 728 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Cma13g00725 728 Coils Coil 114 149 - -
Cma13g00725 728 SUPERFAMILY Homeodomain-like 49 120 IPR009057 -
Cma13g00725 728 Gene3D - 54 137 - -
Cma13g00725 728 MobiDBLite consensus disorder prediction 31 47 - -
Cma13g00725 728 Gene3D - 306 467 IPR023393 -
Cma13g00725 728 Pfam START domain 249 467 IPR002913 GO:0008289
Cma13g00725 728 SMART START_1 248 467 IPR002913 GO:0008289
Cma13g00725 728 MobiDBLite consensus disorder prediction 31 65 - -
Cma13g00725 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 58 725 - -
Cma13g00725 728 CDD START_ArGLABRA2_like 243 466 - -
Cma13g00725 728 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Cma13g00725 728 SMART HOX_1 61 124 IPR001356 GO:0003677
Cma13g00725 728 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Cma13g00725 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 725 IPR042160 -
Cma13g00725 728 SUPERFAMILY Bet v1-like 239 468 - -
Cma13g00725 728 CDD homeodomain 62 121 IPR001356 GO:0003677
Cma13g00725 728 SUPERFAMILY Bet v1-like 488 720 - -
Cma13g00725 728 ProSiteProfiles START domain profile. 239 470 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00302 Cma13g00725 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00725 Cma-Chr13:6447191 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma13g00725 Cma-Chr13:6447191 6.88E-112 wgd
Cma11g01832 Cma-Chr11:12238851 Cma13g00725 Cma-Chr13:6447191 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma19g00929 Cma-Chr19:8312158 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma20g00628 Cma-Chr20:2926078 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36114 PF01852 START 9.50E-50 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00725 K09338 - csv:101212604 1185.24