Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00740 ATGTTGGTGTCCTCAAAATCCACCGTCTCTGATGCCTCCTCCCTTTCATTCCGATCAGTTCTAAGCCCTTTTAAGCTCCCTTCCCACAACCCAACCTCATCCTACCCTACCCGATCATGGTCAGTTACGCCAATTCATTGTAGTCTTCGGGATCTCCGAGACCGTATCGATTCAGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTCGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGACGTAGATGTTCCTTTAACCAAAGTAAGACCAGTCAAGAAAGTTGCATTAGTTGTTGTCACCGGCGACAGAGGTCTTTGCGGCGGTTTCAACAACTCCATCATTAAGAAAGCCGAAGCCAGAATCTCGGAATTGAAGGAATTGGGTCTTGAGTACACTGTCATCAGCGTTGGCAAAAAGGGTAACTCCTACTTCCTCCGCCGGCCTTACATTCCGGTCGATAAGTTCCTCGAAGGCGGCACGCTTCCGACAGCCAAAGAAGCTCAAGCCATTGCTGATGATGTCTTCTCACTCTTCATCAGTGAGGAGGTTGACAAAGTAGAGCTTTTGTACACCAAATTCGTGTCATTGGTCAAATCCGACCCTGTTATTCACACCCTTCTTCCGCTCTCGCCCAAGGGCGAGATCTGTGACATAAACGGTGTCTGTGTCGACGCCGCCGAAGATGAATTTTTCAGGTTGACAACAAAGGAAGGGAAGCTGACAGTGGAGAGGGATACGGTGCGGACAAGCACCTCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTAAACAGCCAGATTTTGAGGTCACTGCAGGAGTCGCTGGCCAGTGAGCTCGCGGCTAGAATGAGCGCCATGAGCAGTGCAAGTGACAATGCTTCTGAGCTGAAGAGGACTCTGTCGACTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACATGA 1110 48.56 MLVSSKSTVSDASSLSFRSVLSPFKLPSHNPTSSYPTRSWSVTPIHCSLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARISELKELGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDTVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSSASDNASELKRTLSTVYNRQRQAKITGEILEIVAGANALT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6538101 6539210 + CmaCh13G007400.1 Cma13g00740 306567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00740 369 CDD F1-ATPase_gamma 48 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 Pfam ATP synthase 48 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 115 - -
Cma13g00740 369 Gene3D ATP synthase, gamma subunit, helix hairpin domain 264 368 - -
Cma13g00740 369 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 368 - -
Cma13g00740 369 PRINTS ATP synthase gamma subunit signature 120 139 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 PRINTS ATP synthase gamma subunit signature 346 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 PRINTS ATP synthase gamma subunit signature 315 334 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 PRINTS ATP synthase gamma subunit signature 213 230 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 Gene3D - 116 239 - -
Cma13g00740 369 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 48 368 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 48 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 PANTHER ATP SYNTHASE GAMMA CHAIN 1 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma13g00740 369 ProSitePatterns ATP synthase gamma subunit signature. 354 367 IPR023632 -
Cma13g00740 369 Hamap ATP synthase gamma chain [atpG]. 46 368 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00740 Cma-Chr13:6538101 Cma13g01077 Cma-Chr13:8124681 3.44E-27 dispersed
Cma13g00740 Cma-Chr13:6538101 Cma16g00864 Cma-Chr16:5162871 4.20E-139 wgd
Cma13g00740 Cma-Chr13:6538101 Cma18g00259 Cma-Chr18:1357052 2.32E-130 wgd
Cma13g00740 Cma-Chr13:6538101 Cma03g00537 Cma-Chr3:5065340 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00740 K02115 - csv:101214408 629.017