Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00757 ATGGCTTCCTCATCATCCCACCTTCTTCTAACTCTTCTCATCATTCTCTCACTCATCCAATCCTCCCATCAAGATTACTACACCCCAACCAAGAACAACATGAACATAATCGACTCTTGCTGGCGTTCATCCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCAACTGCGCCGTGGGCTACGGCAAGGACGCAATTGGAGGCAAATTTGGCACCATTTACGTAGTCACCGACCCATCTGACAACCCTTCAAACCCCAAATATGGAACGTTGCGTTATGGTGTGATTCAAAATAAGCCACTTTGGGTTGTGTTTGCTAAGAGCATGGTTATTGTGTTGAAGAATGAGCTGATGATAAATAGTTTCAAGACCATTGATGGACGTGGCGCTAATGTGGAGATTGCTTATGGGCCTTGCATTACGGTGCAAAGGGTTAGCCATGTTATTATACATGGAATTAGTATCCATGATTGTAAGCCTGCCAAAGCTGGGCTTGTTAGAGACAGTGTCACGCATGTTGGCAAACGTAGAGGCTCTGATGGTGATGCCATTTCTATATTTGGTTCTTCCCATGTTTGGATTGATCATTGTTACTTAGCTCGATCCACTGATGGACTTATTGATATCATTCATGCTTCCACCGCTGTTACTGTCTCAAATAACTACTTCTCCCAGCATGACAAGGTGATGCTGCTCGGACATAATGATGGGTTCACCGATGATAAAATTATGAGGGTCACCATTGTCTTTAACCGCTTCGGAGCTGGCCTTATCGAGAGGATGCCGAGGGTTAGGTTCGGTTACACCCACGTTGCCAACAATCGATACGACGAGTGGAAAATGTACGCAATAGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTCGTAGCTCCCAAGAACTCAAATGCCAAACAGGTAACAAAAAGAGAGGTCAACAAAGGGTGGAATAACTGGAAATGGAGATCCTCAAGAGACGTGTTCTTGAATGGCGCTTACTTTGTGCAATCTGGGTGGGGAAGTTGCAGCCCATTCTACACAAGGGCTCAGTCCTTTCCAGTGGCTCCAGGCTCCAAGGTTCCAGCTTTGACTGCAAATTCTGGGCCACTTCGTTGCTCCATTGGCAAACCTTGCTGA 1146 46.16 MASSSSHLLLTLLIILSLIQSSHQDYYTPTKNNMNIIDSCWRSSSNWAKNRQALANCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWVVFAKSMVIVLKNELMINSFKTIDGRGANVEIAYGPCITVQRVSHVIIHGISIHDCKPAKAGLVRDSVTHVGKRRGSDGDAISIFGSSHVWIDHCYLARSTDGLIDIIHASTAVTVSNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYTHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPKNSNAKQVTKREVNKGWNNWKWRSSRDVFLNGAYFVQSGWGSCSPFYTRAQSFPVAPGSKVPALTANSGPLRCSIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6599653 6601541 - CmaCh13G007570.1 Cma13g00757 306584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00757 381 Pfam Pectate lyase 114 299 IPR002022 -
Cma13g00757 381 PANTHER PECTATE LYASE 18-RELATED 13 379 IPR045032 GO:0030570
Cma13g00757 381 SMART amb_all 108 305 IPR002022 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cma13g00757 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cma13g00757 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cma13g00757 381 Gene3D - 34 374 IPR012334 -
Cma13g00757 381 PANTHER PECTATE LYASE 16-RELATED 13 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00769 Cma-Chr1:4141420 Cma13g00757 Cma-Chr13:6599653 4.17E-68 dispersed
Cma13g00757 Cma-Chr13:6599653 Cma13g00770 Cma-Chr13:6648875 8.23E-146 dispersed
Cma13g00757 Cma-Chr13:6599653 Cma03g00550 Cma-Chr3:5115749 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00757 K01728 - csv:101211379 696.041