Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00766 ATGGATCCAATATCCTACAAAAATGTTCATCAACTTTTGCACCAAATCACTCAAGCTCCTCTTCCTCTTTTCCTCTTCCTCTTCCTCTTCCTCTTCCTACTTTCACTCAAACTCTTCTCCACCAAAAGCACCAAAGCCTTACCACCATCACCACCACAGCTTCCAATAATTGGCAACCTCCACCAGCTAGGCAGCCTCCCACACCGCTCAGTGGCATCTCTGTCCGAAAAATATGGCCCTCTCATGCTCCTCAAGCTCGGCCAAACCCCAACCCTCGTCGTCTCATCCGCAAAGCTAGCTAGAGAAGTCATGAGGTCCCATGACACCATCTTCTCAAACAGATACCAAAACAAAGCTGCACAATCCTTAATCTATGGATGCCATGATGTGGCCTTTGCTTCCTATGGAGAGCAATGGAGACAGGCCAGAAAGCTCTGTGTTTTGGAGCTTTTGAGTGCCAAAAGAGTTGAGTGTTTTCAATATGTGAGAGATGAGGAAGTTGGTGAGCTTGTCAAGAAGATTCGTAAAGGTTGTGGCTTTGGAGATTCAGGGGTGAATCTTAACCAGGTTTTGATGTCAACTTCGAATAATATTGTGTCGAGATGCGTTTTGGGAGAGAAACTTGAGAATGGAAAAGGGATGAGTGGGTTTGGAGATGTGACGAGGAAGGTTATGGTGTTGTTGTCGGCGTTTTGTGTTGGTGATGCGTTGCCTTGGCTTGGATGGGTTGATGTGGTGAGGGGGTTCCATCGGGAACTCAAGAACACTTTTGAAGCGTTGGATGGGCTGTTTGATAGAGTGATTGATGAACATAGAGAGAAGATGAAGAACAGTGATCGATCTGGGGAGATGGATTTTGTTGATATCATTCTACAATTGCAACAACGGGATACTCTTGATTATCGAACCGACACGACAGCAACAGGCTTGGAATGGGCAATGGCTGAGCTGATGAGAAACCCAACAGCCATGAAAAAGGTTCAAGAAGAGGTGAGGACAATAACGGGAAAGAAACCAAAGATCGAAGCGGAAGACATTCAAAAGATGAAGTACATGCAGTGTGTTATAAAAGAGTCTCTAAGACTCCACCCTCCAGTTCCTCTATTGGTGCCCCGACAAACAATGGGCACTGTGAACCTTGAAGGCTACGAAATTCCACCAAAAACCAGCGTTTGGGTCAATGCTTGGGCAATTCAAAGAGACCCCAAAAGCTGGGAAAACCCAAATGAGTTCATCCCAGAGAGATTCATGGACCCAAACTCGGTTGATTTCAAAGGCCAAGACTTTGAGTTCATTCCATTTGGGAGTGGAAGAAGGAAGTGCATTGGAATGTCGTTTGGGTTGGCTGCTTTTGAATCTGTATTGGCTAATCTTCTTTATTGGTTTGATTGGAAGCTGCCGGCCGGGGAGCCATTGGATATGACTGAAGAACATGGGCTCTCAGTGTTCATGAAACATCCTCTCACTCTTGTCCCAATTCCACGCTCTGTGAAGACGAAGCTGGAAGAATACAGAAGAATGGATCGAACCTCAAACTTTCAACAACATTGGAAGAGGCAACAATTTCAATATGGAGAAGCCATTCACATCAATCCCATCTCTATTTCTTTTTGTCTTTTCTTCTTCTTCCTCCTCCTCCTCCTTTTACTTAAGCTGTTCAGAGGCAAAAAACAAAGCATCAATTTACCTCCTTCACCACCCAAACTGCCAATCATCGGCAACCTTCACCAATTAGGAACCTTGCCGCACCAATCTTTGGCGTCTCTTTCGAAGAAACATGGGCCTCTCATGCTCCTAAAGCTAGGCCAGACCCCAACTCTGGTGGTTTCATCAGCAAAAATGGCTAGAGAAGTAATGAAGACCCATGACCTCAAATTCTCCAACAGACCCAAAACTACAGCCACTAATCTCTTGTTCTACGGATGCCAAGACATGGGTTTTGCCCCATATGGTGCGTACTGGAGACGAGCCAGAAAAATGTGCGTTCTTGAGCTTTTTAGCTTCAAAAGAGTGGAGTCCTTTCAGTATATCAGAGATGAAGAAGTCGGTGTTCTTATCAGTAGGATTCATAAAGCTTGTGCTGGCGGTGAGGTTGTGAATCTTAGCAAGTTATTCCTTCAAATCTCAAACAATGTAGTGTCCAGATGCGTTATGGGAAAGAAGTTTGAGGATGAAAATGGGAACAATAGATTTCGAGACGTATCAAGAAGGGTAATCGAGCTACTCTCAGCGTTTTGTGTGGCAGATTTCTTCCCTGCTTTCGGATGGGTTGATGTAGTTAGAGGGTTCATTGGGGAACTGAAAACAATTTCTAAAACAATGGATGAATTCTTGGATAGGGTAATTGAAGAGCACAAGACAGAGTTAAGAACCGGTAAACCTGATGATAAAAGGGATTTCTTGGATATTATGCTGCAGCTCAACCAAGATATCATGCTCGACTATCATTTCACTCCGGACAACCTCAAAGCCATATTACAGGACATGTTCGCCGACGTCGTCGACATCGAAGGCTACCATGTGGCATCAGGAACCAGTGTCTTCGTGAATGCTTGGGCAATCCAAAGAGACCCCACAATCTGGGAAAGGCCAAACGAGTTCATCCCAGAGAGATTCATGGAGAAAAATTGTGCTGACTTCAAAGGCTTAGATTTTCAGTTCATACCATTTGGAAGTGGAAGAAGGAAGTGCCCTGGATTGTCGTTTGCGCTTGCTTCTTTTGAATGTGTGTTGGCCAACCTTCTCTATTGGTTTGATTGGAAGTTGCCTGAGGACATGGCGGGAGAATTGTTGGACATGAGTGAACTCCATGGAATCACTGTTCGCAAGAAGATTCCTCTCCATCTCACCCCATTACCATTGTAG 2865 44.82 MDPISYKNVHQLLHQITQAPLPLFLFLFLFLFLLSLKLFSTKSTKALPPSPPQLPIIGNLHQLGSLPHRSVASLSEKYGPLMLLKLGQTPTLVVSSAKLAREVMRSHDTIFSNRYQNKAAQSLIYGCHDVAFASYGEQWRQARKLCVLELLSAKRVECFQYVRDEEVGELVKKIRKGCGFGDSGVNLNQVLMSTSNNIVSRCVLGEKLENGKGMSGFGDVTRKVMVLLSAFCVGDALPWLGWVDVVRGFHRELKNTFEALDGLFDRVIDEHREKMKNSDRSGEMDFVDIILQLQQRDTLDYRTDTTATGLEWAMAELMRNPTAMKKVQEEVRTITGKKPKIEAEDIQKMKYMQCVIKESLRLHPPVPLLVPRQTMGTVNLEGYEIPPKTSVWVNAWAIQRDPKSWENPNEFIPERFMDPNSVDFKGQDFEFIPFGSGRRKCIGMSFGLAAFESVLANLLYWFDWKLPAGEPLDMTEEHGLSVFMKHPLTLVPIPRSVKTKLEEYRRMDRTSNFQQHWKRQQFQYGEAIHINPISISFCLFFFFLLLLLLLKLFRGKKQSINLPPSPPKLPIIGNLHQLGTLPHQSLASLSKKHGPLMLLKLGQTPTLVVSSAKMAREVMKTHDLKFSNRPKTTATNLLFYGCQDMGFAPYGAYWRRARKMCVLELFSFKRVESFQYIRDEEVGVLISRIHKACAGGEVVNLSKLFLQISNNVVSRCVMGKKFEDENGNNRFRDVSRRVIELLSAFCVADFFPAFGWVDVVRGFIGELKTISKTMDEFLDRVIEEHKTELRTGKPDDKRDFLDIMLQLNQDIMLDYHFTPDNLKAILQDMFADVVDIEGYHVASGTSVFVNAWAIQRDPTIWERPNEFIPERFMEKNCADFKGLDFQFIPFGSGRRKCPGLSFALASFECVLANLLYWFDWKLPEDMAGELLDMSELHGITVRKKIPLHLTPLPL 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6622562 6632459 - CmaCh13G007660.1 Cma13g00766 306593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00766 954 Pfam Cytochrome P450 563 831 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 Pfam Cytochrome P450 834 935 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 Pfam Cytochrome P450 48 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 Gene3D Cytochrome P450 553 833 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 SUPERFAMILY Cytochrome P450 48 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 833 952 - -
Cma13g00766 954 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 890 899 IPR017972 GO:0005506|GO:0016705
Cma13g00766 954 PANTHER CYTOCHROME P450 71B11-RELATED 534 832 - -
Cma13g00766 954 PANTHER CYTOCHROME P450 71B11-RELATED 22 494 - -
Cma13g00766 954 SUPERFAMILY Cytochrome P450 559 952 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PANTHER CYTOCHROME P450 71B11-RELATED 833 952 - -
Cma13g00766 954 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Cma13g00766 954 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PRINTS E-class P450 group I signature 194 212 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 534 832 - -
Cma13g00766 954 Gene3D Cytochrome P450 834 949 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 Gene3D Cytochrome P450 40 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00766 954 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 22 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00766 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101208836 679.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma07g00351 Cma13g00766 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00062 Cma-Chr11:311645 Cma13g00766 Cma-Chr13:6622562 1.03E-54 dispersed
Cma13g00766 Cma-Chr13:6622562 Cma18g00200 Cma-Chr18:1079299 1.17E-45 dispersed
Cma13g00764 Cma-Chr13:6619863 Cma13g00766 Cma-Chr13:6622562 4.74E-37 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g2 . . . . Bpe07g00630 . . . . . . Cma07g00351 . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00468 Csa06g03549 . . . . . . . . . Bma11g00024 . . . Cma13g00766 . . . . . . . . . . . . . . . . . . . Lsi02g00644 . . .
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00766 Cma_Chr13 FPKM 0.0 0.0 0.22835 0.393376 0.727541 0.93469 0.477982 6.825414 5.222085 4.266374