Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00770 ATGGCACCGCCAACACTCACTCTCTCTCTCCTCTCCCTCTTTTTCCTCTCCGACTCTCTCTCCGCCGCTCTCTCCGCCTACCCTGCTGCCGTACCTAACCCGGAACTCGTCGTACAAGAAGTACACAGATCCATAGTGAATGCGACGAAGAGGAGAAATTTGGGGTATCTCTCATGCGGAACCGGAAATCCCATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGAATCGGCTTCGGCAAAAACGCCATCGGCGGTCGTGACGGACAAATCTACGTCGTCACCGACGCCGGCGACGATGACCCTGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTCATCCAAGACGAACCCCTCTGGGTCATCTTCGCACGCGACATGGTCATTCGATTAAAAGAGGAACTAATCATGAACTCCTTCAAAACCATCGACGGCCGTGGTGCGAGCGTCCACATCGCCGGTGGCCCCTGCATTACGATTCAATACGTAACAAACATCATAATCCACGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACGGACGTTCGAGATTCCCCTCGGCATTTCGGATTCAGAACCATATCGGACGGCGACGGCGTTTCAATCTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCATTATCAAACTGTAACGATGGTTTAATCGACGCGATTCATGGGTCTACAGCCATCACGATTTCAAACAATTACATGACGCATCACGATAAAGTGATGCTATTAGGCCACAGTGATTCGTACACACAAGACAAGAATATGCAAGTTACCATAGCTTTCAACCACTTCGGCGAAGGGCTTGTTCAAAGAATGCCCAGATGCCGACATGGGTACTTCCATGTGGTGAACAATGACTACACACATTGGGAAATGTACGCTATCGGAGGTAGCGCCGCCCCGACCATCAACAGTCAGGGGAACAGATTCGTTGCACCAAATGACAGATTCAGCAAAGAAGTGACGAAATACGAGGATGCACCGGAGAGTGAATGGAAGAATTGGAACTGGCGGTCGGTTGGGGATCTGATGGTTAACGGTGCGTTTTTCACAGCCTCCGGCGCCGAATCGTCGTCCAGCTACGCCAGAGCGTCAAGCTTAGGGGCGCGGCCGTCGTCTCTGGTCGGAACAATCACAACGAATGCGGGTGCACTGAGCTGCAGAAAGGGCTCCCGCTGCTGA 1236 52.43 MAPPTLTLSLLSLFFLSDSLSAALSAYPAAVPNPELVVQEVHRSIVNATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWVIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSVGDLMVNGAFFTASGAESSSSYARASSLGARPSSLVGTITTNAGALSCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6648875 6650534 - CmaCh13G007700.1 Cma13g00770 306597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00770 411 SMART amb_all 137 334 IPR002022 -
Cma13g00770 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Cma13g00770 411 Gene3D - 62 404 IPR012334 -
Cma13g00770 411 PANTHER PECTATE LYASE 18-RELATED 12 408 IPR045032 GO:0030570
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cma13g00770 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cma13g00770 411 Pfam Pectate lyase 147 328 IPR002022 -
Cma13g00770 411 PANTHER PECTATE LYASE 12 408 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00770 Cma18g00204 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01698 Cma-Chr2:9553186 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma03g00550 Cma-Chr3:5115749 Cma13g00770 Cma-Chr13:6648875 7.14E-145 dispersed
Cma04g02664 Cma-Chr4:18099102 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma05g00056 Cma-Chr5:225612 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma06g01265 Cma-Chr6:8417871 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma12g00046 Cma-Chr12:173505 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma13g00757 Cma-Chr13:6599653 Cma13g00770 Cma-Chr13:6648875 8.23E-146 dispersed
Cma13g00770 Cma-Chr13:6648875 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma14g01872 Cma-Chr14:13264747 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma13g00770 Cma-Chr13:6648875 Cma18g00204 Cma-Chr18:1108778 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00770 K01728 - csv:101209736 770.0