Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00772 ATGGCTCTTGTACACCAACACCACCTCCCACAGTCATTTCAGTCCATTCGCAAGGCCAATCTCAACCAATCCACTTCTAATTCTTGTTTATTTTTTCAATTCAGTACTCGGAAGCTTGCCTGCTGCTTATGTGCGACATCTCCCAATCCCACCAGCCAGTCTCCATCTCCGATTTTCCTCCGTTTTCTCGAAGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAACCTAAAGACGTTCTTGGAGGAAACACGACGGAAGATTGGAACGATCCGTTAGTCAGATTTTTCAAATCCCGGAATTCAACAACGCAAGACCCATTACCCGAAAGCAAATTATCCCTTCAGAAGAACCGCCGTTCGTCGTGGCATCTTGCCTCCGAGGTTGAATGTTCCGTTGAAGCTGAAATTGCACCCGATGATGACAAGAAACAGTCCGGTTCGGTGAGTAGGAATTCTAGGGTATTACCGGATGGTGTCGTCGGAGACATTGTGCGAACTGCGAGGAATTTGCCTCAAAATACCACTCTAGGAGAGGCTTTGGGTGATTTTGAAGGAAAAATTGATGAGAAAGAATGTCTGGAGGTGCTGCGCTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGCCTGTATTTCTTTGAATGGATGGGGTTGCAGGAGCCTTCGCTTGTTACACCTCGTGCTTATTCTATTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGATAAAATTATGGTGTTGTTCAAGAACATTCCACTCAAGAAGGAGCTTCAGGATGTTCATGTGTATAATTCTGCAATGTCTGGGCTTATGGTCTGTAAGAGGTATAATGATGCTTGCGAGGTGTACGAGGCCATGGAAACAAACAAGGTTAATCCCGATCATGTGACATGTTCTATAATGATTACAGTCATGAGAAAGATCGGTCGCAGCGCAAAGGATTCTTGGGATTACTTCGAGAAAATGAACGAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTGGGTGCTCTGATTAAAGCGTTCTGTGACGAGGGGCTGAAGAGTCAAGCACTCATCATCCAACTGGAGATGGAGAAGAAAGGGGTTGCTTCGAATGCAATCGTGTATAACACGATCATGGATGCATTTAGTAAATCAAACCAAATCGAGGAAGCTGAAGGTCTCTTTGCCGAAATGAAAGCCAAAGGAGTGAAACCAACAAGTGCAACTTTTAACATCTTAATGGATGCATACAGCAGGCGGATGCAACCCGAGATTGTCGAGAAGCTTCTGATTGAAATGAAGGAGATGGGATTCGAGCCGAATGTGAAGTCATACACTTGCTTGATTAGTGCTTACGGGAGGAAGAAGACAATGAGCGACATGGCTGCAGATGCATTCTTGAGGATGAAAAAGAATGGTATAAAGCCAAATTCTCATTCATATACAGCTCTGATTCATGCTTATTCTGTTAGTGGTTGGCACGAGAAAGCTTACTCGACGTTCGAGAACATGCTGCGAGAAGGTTTAAAGCCTTCCATTGAAACTTACACAACGCTACTCGACGCGTTTAGACGTGCAGGTGATACCGAGGCATTGATGAAAATCTGGAAGTTCATGGTTAGAGAAAAAGTAGCAGGCACAAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAAGGTCATTATATTGAAGCAAGAGATGTGATATCTGAGTTCAGCAAGATTGGGCTGCAGCCAACCGTTATGACATACAACATGCTGATGAACGCATATGCAAGGGGCGGTCAACATCTAAAGATGCCGCAGCTTCTGCAAGAGATGGCTGCTTGGGAGCTAAAACCCGACTCCGTTACTTACTCAACCATGATTTATGCGTTCGTACGTGTTCGGGATTTCAAACGAGCGTTCTTCTATCACAAGAAGATGGTAAAAAGTGGGCAAGTGCCTGATGTGAAGTCGTATCAGAAACTTCGATCAATTTTGGATGAGAAACTCGATACGAAGAACAGGAAGGATAAGAGTGCCATTTTGGGTATAATGAACAGCAAATTGGGTATGGTGAAAGCTAAGAAGAAGGGCAAGAAGGATGAGTTTTGGAAGAACAAGAGAAAGTATGTGAAAACAATGAGAGTTTCTCCTAATGAACAAATATGA 2151 43.65 MALVHQHHLPQSFQSIRKANLNQSTSNSCLFFQFSTRKLACCLCATSPNPTSQSPSPIFLRFLEEEEEEEEEEEEEEEPKDVLGGNTTEDWNDPLVRFFKSRNSTTQDPLPESKLSLQKNRRSSWHLASEVECSVEAEIAPDDDKKQSGSVSRNSRVLPDGVVGDIVRTARNLPQNTTLGEALGDFEGKIDEKECLEVLRLLGEENLVVCCLYFFEWMGLQEPSLVTPRAYSILFPLLGRAGMGDKIMVLFKNIPLKKELQDVHVYNSAMSGLMVCKRYNDACEVYEAMETNKVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNEKGVKWSPEVLGALIKAFCDEGLKSQALIIQLEMEKKGVASNAIVYNTIMDAFSKSNQIEEAEGLFAEMKAKGVKPTSATFNILMDAYSRRMQPEIVEKLLIEMKEMGFEPNVKSYTCLISAYGRKKTMSDMAADAFLRMKKNGIKPNSHSYTALIHAYSVSGWHEKAYSTFENMLREGLKPSIETYTTLLDAFRRAGDTEALMKIWKFMVREKVAGTRVTFNILLDGFAKQGHYIEARDVISEFSKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAAWELKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLRSILDEKLDTKNRKDKSAILGIMNSKLGMVKAKKKGKKDEFWKNKRKYVKTMRVSPNEQI 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6661388 6664899 + CmaCh13G007720.1 Cma13g00772 306599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00772 716 MobiDBLite consensus disorder prediction 64 80 - -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cma13g00772 716 Gene3D Tetratricopeptide repeat domain 316 454 IPR011990 GO:0005515
Cma13g00772 716 MobiDBLite consensus disorder prediction 64 92 - -
Cma13g00772 716 Coils Coil 60 80 - -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Cma13g00772 716 Gene3D Tetratricopeptide repeat domain 560 677 IPR011990 GO:0005515
Cma13g00772 716 Gene3D Tetratricopeptide repeat domain 455 559 IPR011990 GO:0005515
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 406 439 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 582 614 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 512 541 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 616 650 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 476 509 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 265 297 IPR002885 -
Cma13g00772 716 TIGRFAM PPR: pentatricopeptide repeat domain 546 578 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Cma13g00772 716 PANTHER OS03G0856100 PROTEIN 1 708 - -
Cma13g00772 716 Gene3D Tetratricopeptide repeat domain 162 315 IPR011990 GO:0005515
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 473 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cma13g00772 716 Pfam PPR repeat family 368 415 IPR002885 -
Cma13g00772 716 Pfam PPR repeat family 578 626 IPR002885 -
Cma13g00772 716 Pfam PPR repeat family 437 485 IPR002885 -
Cma13g00772 716 Pfam PPR repeat family 262 307 IPR002885 -
Cma13g00772 716 PANTHER - 1 708 - -
Cma13g00772 716 Pfam Pentatricopeptide repeat domain 498 555 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 332 IPR002885 -
Cma13g00772 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00772 - - - bhj:120069367 1204.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00772 Cma18g00109 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00772 Cma-Chr13:6661388 Cma11g00878 Cma-Chr11:4447268 6.16E-19 dispersed
Cma13g00772 Cma-Chr13:6661388 Cma19g00618 Cma-Chr19:6694118 4.30E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00772 Cma_Chr13 FPKM 4.617539 3.839323 6.67655 6.037105 11.769824 12.187076 11.119687 7.405191 8.156173 7.033057