Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00774 ATGCTAATGGTACTTGCACGATTGCCCATGTACTGCCTAACATATGGACTGGAACGATATCAACTTGTTGGGTCGACTGCATCAGATCCCTTAGATAATTTTAAGAAATCTGTTGTATCTATTATAGAGGAATACTTTAGCGCTGGTGACGTGGAATTGGCTGCATTTGATCTTGGAGATCTAGGCTCAAGTAACTATCATCCTTACTTTATTAAACGGCTAGTATCTATGGCAATGGACAGACATGATAAGGAGAAGGAAATGGCTTCAGTTCTGTTATCAGCTTTGTATGCCGATGTTATCAGTCCTGCCCATATAAGAGATGGATTTTTTATGTTACTTGAATCTGCTGATGATCTTGCTGTCGATATACCAGACGCAGCTGATATCCTTGCTTTGTTCTTAGCTCGTGCTGTAGTTGATGACATACTTCCCTTAGCATTTCTAGCCAGGGCAAGGAAGGCATTGTTGGAACCATCCAAAGGAACTCAGGCTATCCAAACTGCCGAGAAGAGCTATCTCTCTGCTCCACATCATGCCGAACTTGTGGAGAAAAAATGGGGAGGCAGCACACATTTTACAGTTGAGGAAGTGAAGAAAAAGATAGCTTATCTCTTAAGGGAATATGTTGAGAATGGAGATACCATCGAGGCTTGCAGATGTATAAGGCAGTTAAGCGTTTCATTCTTTCATCATGAGGTTGTGAAGAGGGCTTTGATTCTTGCCATGGAGATCCGAAAAGCAGAACCCCTGATTCTGAAGCTTCTGAATGAAGCTGCTGAAGAAGGTCTGATAAGCTCAAGTCAAATGATTAAGGGGTTTTCTAGGCTGGCGGAGAGCCTTGACGACCTTGCTCTTGATGTACCATTGGCAAAATCGTTGTTTGAATCGTTGGTCCTGAGGGCCATATCTGAAGGATGGCTCGATGCTTCCTTCATGAAATCTTCGGATGAAGATATAGATGTTGGATCTACAGATGAAAAGTTGAGGCGCTATAAGGAAGAGGTTGTAACTATAATTCATGAATATTTTCTTTCAGATGACATTCCTGAATTAATAAGAAGCCTAGAAGATCTTGGTGCACCCGAGTATAATCCAATCTTTTTGAAGAGGCTGATTACACTTGCAATGGATAGGAAAAACAGAGAAAAAGAAATGGCTTCCGTGCTCCTTTCAGTTCTTCACATCGAGATATTTTCTACGGACGATATAGTCAATGGTTTTGTAATGCTACTTGAGTCTGCAGAAGATACAGCCCTAGACATTTTGGATGCATCAAATGAGCTTGCTCTCTTTCTAGCCAGAGCTGTGATTGATGACGTCTTGGCTCCTCTAAATCTCGAGGATATCGCTTGTAGGTTGATCCCAAATTGTACAGGTAGTGAAACTGTTCGAATGGCCCGGTCATTAATTGCAGCTCGGCACGCTGGTGAGCGGCTTTTAAGATGCTGGGGTGGTGGAACTGGCTGGGCAGTAGAGGATGCGAAAGACAAGATTCAGAAGCTCTTAGAGGAGTACGAAAGTGGAGGAGTTGTGAGTGAAGCTCTTCAGTGCATCCGTGATCTAGGGATGCCTTTCTTCAACCACGAGGTTGTGAAGAAGGCATTGGTTATGGCCATGGAGAAGAAGAACGACAGGATTCTAGATCTTCTACAGGAATGCTTCAATGTTGGCCTGATCACCATCAACCAAATGACCAAAGGCTTCTCTAGGATCAAAGACAGCCTCGACGATCTCGCACTCGATATTCCAAATGCAAGCAAGAAATTCACTTCCTATGTGGAGCACGCCCAAAAGAAAGGATGGCTTTTACCATCCTCCTTCGGATCATCTGGGGATGCAGCAGATTCTTCAGTGCTCTTGGCTGCAGCTTCCTGA 1878 43.61 MLMVLARLPMYCLTYGLERYQLVGSTASDPLDNFKKSVVSIIEEYFSAGDVELAAFDLGDLGSSNYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAHIRDGFFMLLESADDLAVDIPDAADILALFLARAVVDDILPLAFLARARKALLEPSKGTQAIQTAEKSYLSAPHHAELVEKKWGGSTHFTVEEVKKKIAYLLREYVENGDTIEACRCIRQLSVSFFHHEVVKRALILAMEIRKAEPLILKLLNEAAEEGLISSSQMIKGFSRLAESLDDLALDVPLAKSLFESLVLRAISEGWLDASFMKSSDEDIDVGSTDEKLRRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKRLITLAMDRKNREKEMASVLLSVLHIEIFSTDDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDIACRLIPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEALQCIRDLGMPFFNHEVVKKALVMAMEKKNDRILDLLQECFNVGLITINQMTKGFSRIKDSLDDLALDIPNASKKFTSYVEHAQKKGWLLPSSFGSSGDAADSSVLLAAAS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6667950 6670629 + CmaCh13G007740.1 Cma13g00774 306601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00774 625 ProSiteProfiles MI domain profile. 33 154 IPR003891 -
Cma13g00774 625 SUPERFAMILY ARM repeat 330 487 IPR016024 -
Cma13g00774 625 ProSiteProfiles MI domain profile. 197 318 IPR003891 -
Cma13g00774 625 SUPERFAMILY ARM repeat 491 608 IPR016024 -
Cma13g00774 625 Gene3D - 26 175 - -
Cma13g00774 625 Gene3D - 325 474 - -
Cma13g00774 625 ProSiteProfiles MI domain profile. 331 452 IPR003891 -
Cma13g00774 625 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 16 607 - -
Cma13g00774 625 Pfam MA3 domain 333 442 IPR003891 -
Cma13g00774 625 Pfam MA3 domain 198 309 IPR003891 -
Cma13g00774 625 Pfam MA3 domain 34 145 IPR003891 -
Cma13g00774 625 Pfam MA3 domain 496 603 IPR003891 -
Cma13g00774 625 PANTHER PROGRAMMED CELL DEATH 4 16 607 IPR039778 GO:0045892
Cma13g00774 625 SUPERFAMILY ARM repeat 32 192 IPR016024 -
Cma13g00774 625 SUPERFAMILY ARM repeat 194 314 IPR016024 -
Cma13g00774 625 SMART ma3_7 332 443 IPR003891 -
Cma13g00774 625 SMART ma3_7 34 145 IPR003891 -
Cma13g00774 625 SMART ma3_7 198 309 IPR003891 -
Cma13g00774 625 SMART ma3_7 495 604 IPR003891 -
Cma13g00774 625 Gene3D - 482 608 - -
Cma13g00774 625 Gene3D - 184 318 - -
Cma13g00774 625 ProSiteProfiles MI domain profile. 494 613 IPR003891 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00774 - - - csv:101209979 1064.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00774 Cma18g00205 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00774 Cma-Chr13:6667950 Cma17g00068 Cma-Chr17:318062 1.93E-08 dispersed
Cma13g00774 Cma-Chr13:6667950 Cma18g00205 Cma-Chr18:1120663 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00774 Cma_Chr13 FPKM 17.913996 19.620197 19.294582 22.559177 13.836839 14.398234 16.0341 17.682127 18.356749 17.345413