Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00775 ATGCCTCTCAAGACAGAACATGGAGCATCGGACAGCTCCCTCGACGAGCACTCGAAGGCGGCCCATTCTTCTAAAGTCGTTGTTCTTGCTGACCTCAATGTTGATCCTCCAGAAATGGACGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCTAGGTTATCTGTGGATGAGAGCAATCAAGACAAAACTGTGGCAATTTGCAAGGATACTAATACAATGGAAGTTGAAGGTAGACATGTAAGCAAAATAGGGAAGTGCCGTTCAAGAAACAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGCAGATGGTGATCAACATGGTCAAGGTGTTTCAACTTCACGCGAAGAAAAAGTCAGCAGCCTCAAAACTGGGTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTAATGTATCAGAGGTTGGGCCAGCCACAAAAGGCTGTTTCAGCATATGAGAAGGCAGAGGAAATCTTACTCCAAAGTGATGTTGAGATTCACAGGCCAGAGTTGCTCTCATTGGTCCAAACTCATCATGCACAGTGTCTCCTTCTAGAAAGTGCAGGGGATAATAGTTCAGACAAAGAACTTGATCAAGAGGAGCTTGACGAGATTCTTTCTAAACTTAAGCATTCAATTCAATCTGATGTTAGACAGGCAGCTATGTGGAATACCCTAGGCTTGATACTTCTTTCTACTGGTCGAGTGAAGAGTGCCCTTTCAGTGTTATCATCCCTGTTGGCCATTGTCCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAACATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGAAAGATCAAAATCATCCTGCTGCTCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGACTCTAAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGTGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGTAGCAAAACTAGAGCCAAATTGCATGGCTATGAGATATTCTGTTGCTATGCACCGACTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAGCTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGCTTGACAATCGATCATCCTGTAGCATGGGCTGGGCTTTCCATGGTTCACAAGGCTCAACATGAGATTGCTTCTGGATTTCGTACAGATCAGAGTGAACTGAGAGAAGTGGAAGAACATGCCGTCTACAGTTTATATCAGGGAATAGCTGAGGACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCACAGTCTCTGTACACGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCTCGCTTTAAGAACTGTAGCTATGCATGGTCAAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCCGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATTCCGTATTTTGCAACCTCGGAAATCTGTATCGACAGCAAAAACAGTACGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCTGGTTATGCACCTGCATTTAACAATCTAGGATTAGTGTTTATTGCAGAGGGTCGATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTTGAGGCTGATCCGTTGCTCGATTCAGCTAAGTCGAATTTGATTAAAACAGTAGCCGTATCTCGATTATGTAATAGCTTATCATCGTGTCGTGTTAAAGATTGA 1944 43.62 MPLKTEHGASDSSLDEHSKAAHSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSVDESNQDKTVAICKDTNTMEVEGRHVSKIGKCRSRNNKVEYSLDSAADADGDQHGQGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAEEILLQSDVEIHRPELLSLVQTHHAQCLLLESAGDNSSDKELDQEELDEILSKLKHSIQSDVRQAAMWNTLGLILLSTGRVKSALSVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILKDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLATLKVDPKAAHAWANLANVYFVTGDHRSSAKCLEKVAKLEPNCMAMRYSVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGLTIDHPVAWAGLSMVHKAQHEIASGFRTDQSELREVEEHAVYSLYQGIAEDPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKNCSYAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHSVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGRWEEAKYCFEKALEADPLLDSAKSNLIKTVAVSRLCNSLSSCRVKD 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6671253 6678249 + CmaCh13G007750.1 Cma13g00775 306602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00775 647 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 8 645 - -
Cma13g00775 647 Pfam Tetratricopeptide repeat 354 387 IPR019734 GO:0005515
Cma13g00775 647 Pfam Tetratricopeptide repeat 140 169 IPR019734 GO:0005515
Cma13g00775 647 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Cma13g00775 647 SUPERFAMILY TPR-like 137 390 IPR011990 GO:0005515
Cma13g00775 647 ProSiteProfiles TPR repeat region circular profile. 587 618 - -
Cma13g00775 647 MobiDBLite consensus disorder prediction 1 23 - -
Cma13g00775 647 Gene3D Tetratricopeptide repeat domain 119 313 IPR011990 GO:0005515
Cma13g00775 647 ProSiteProfiles TPR repeat region circular profile. 553 584 - -
Cma13g00775 647 Gene3D Tetratricopeptide repeat domain 327 423 IPR011990 GO:0005515
Cma13g00775 647 SUPERFAMILY TPR-like 480 618 IPR011990 GO:0005515
Cma13g00775 647 Gene3D Tetratricopeptide repeat domain 467 551 IPR011990 GO:0005515
Cma13g00775 647 Pfam Tetratricopeptide repeat 241 300 - -
Cma13g00775 647 Pfam Tetratricopeptide repeat 555 616 - -
Cma13g00775 647 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 8 645 - -
Cma13g00775 647 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515
Cma13g00775 647 ProSiteProfiles TPR repeat profile. 553 586 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 140 173 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 354 387 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 231 264 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 265 298 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 517 550 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 587 620 IPR019734 GO:0005515
Cma13g00775 647 SMART tpr_5 553 586 IPR019734 GO:0005515
Cma13g00775 647 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515
Cma13g00775 647 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Cma13g00775 647 MobiDBLite consensus disorder prediction 100 120 - -
Cma13g00775 647 ProSitePatterns EF-hand calcium-binding domain. 201 213 IPR018247 -
Cma13g00775 647 Gene3D Tetratricopeptide repeat domain 552 630 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00775 - - - cmos:111431636 1257.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00775 Cma-Chr13:6671253 Cma11g00959 Cma-Chr11:5061279 2.24E-06 dispersed
Cma13g00775 Cma-Chr13:6671253 Cma10g01032 Cma-Chr10:5619791 7.75E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00775 Cma_Chr13 FPKM 9.448008 8.641157 8.426213 8.400691 12.309425 11.058517 9.91154 14.442309 13.341874 13.673986