Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00776 ATGAAGCGCTTCTTTAAGCCAATAGAGAAGGAAGGGTCTTCGAAGAAGGCGGCTCTCTCACCTTCACTGAAAGATGGTGATGATTCGGAAGCATCAGTGTCGGACAAGAAAGAGCCTCTGAAGTTTATAACTTGGAATGCAAATAGTTTACTTCTCAGAGTTAAAAACGACTGGCCGGAATTCACCAAGTTCGTCACCAATTTTGATCCGGATGTTATTGCCATACAAGAAGTAAGGATTCCTGCAGCAGGTTCAAAAGGTGTATCTAAAAACCAAGGAGAATTGAAAGATGACACAAGCGCATCACGGGAAGAGAAGCAGATGTTGATGCGTGCTCTTTCCAGTCCACCATTTGCAAATTATCGTGTTTGGTGGTCTCTTTCAGATTCCAAGTATGCTGGAACTGCATTGTTTATAAAAAAGTGTTTTCAACCAAAAAAGGTTTTCTTCAATCTGGACAGAATAGCTTCAAAGCATGAAGTGGACGGTCGTGTAATTTTAGCTGAATTCGAGGAATTTCGTTTATTGAATACATATTCACCAAATAATGGATGGAAGGAAGAGGAGAACTCTTTTAAGAGGAGAAGAAAATGGGATAAGAGAATGTTGGAATTTGTTATCCAATCTTCTGATAAGCCTCTTATATGGTGCGGCGACTTAAATGTTAGTCATGAAGATATTGATGTGAGCCATCCAGAGTTTTTCAGCGCAGCAAAACTTAATGGGTACATACCTCCAAATAAGGAGGATTATGGACAGCCTGGTTTTACCTTGGCTGAAAGGAAGCGTTTCAGTGCCATATTGAAAGAGGGAAAGCTGATAGATGCATATAGATTCCTGCACAAGGAGAAAGACATGGAGTGTGGCTTCTCTTGGTCTGGGAACCCTATTGGAAAGTACCGAGGCAAAAGGATGAGAATCGACTATTTCTTAGCTTCCGAGAGTCTGGCAGATAGGATTGTTTCGTGTGAGATGCATGGGCAAGGGATTGAATTACAAGGTTTCTACGGAAGTGATCATTGCCCGGTTTCGCTTGAGCTGTCAGAAGCCAGTTCTTGCCCTGAGTCTCAAAAAAGCTAA 1080 41.76 MKRFFKPIEKEGSSKKAALSPSLKDGDDSEASVSDKKEPLKFITWNANSLLLRVKNDWPEFTKFVTNFDPDVIAIQEVRIPAAGSKGVSKNQGELKDDTSASREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFIKKCFQPKKVFFNLDRIASKHEVDGRVILAEFEEFRLLNTYSPNNGWKEEENSFKRRRKWDKRMLEFVIQSSDKPLIWCGDLNVSHEDIDVSHPEFFSAAKLNGYIPPNKEDYGQPGFTLAERKRFSAILKEGKLIDAYRFLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFLASESLADRIVSCEMHGQGIELQGFYGSDHCPVSLELSEASSCPESQKS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6679120 6685614 + CmaCh13G007760.1 Cma13g00776 306603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00776 359 MobiDBLite consensus disorder prediction 1 35 - -
Cma13g00776 359 ProSiteProfiles AP endonucleases family 1 profile. 40 349 IPR004808 GO:0004518|GO:0006281
Cma13g00776 359 CDD Ape1-like_AP-endo 40 347 - -
Cma13g00776 359 Pfam Endonuclease/Exonuclease/phosphatase family 44 340 IPR005135 GO:0003824
Cma13g00776 359 SUPERFAMILY DNase I-like 40 347 IPR036691 -
Cma13g00776 359 TIGRFAM xth: exodeoxyribonuclease III (xth) 40 347 IPR004808 GO:0004518|GO:0006281
Cma13g00776 359 Gene3D Endonuclease/exonuclease/phosphatase 6 349 IPR036691 -
Cma13g00776 359 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 30 351 - -
Cma13g00776 359 PANTHER AP ENDONUCLEASE 30 351 IPR004808 GO:0004518|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00776 - - - csv:101210880 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00877 Cma-Chr6:5441826 Cma13g00776 Cma-Chr13:6679120 1.41E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g891 Blo04g00709 . . . . . . . Cmo13g00807 . . . . . . Cpe20g00195 . . . . . . . . . . . . . . . Cone2ag0948 . . . Lsi02g00463 . Chy12g01207 Cme12g01628 . . . . . Bpe15g00664 Bma03g00757 . . . . Cma13g00776 . Car13g00622 . . . Bhi08g01692 Tan05g2896 . Lac10g0535 . . . Cla03g00320 Cam03g0336 Cec03g0328 Cco03g0342 Clacu03g0338 Cmu03g0944 Cre03g0637 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012061 0 2 1 1 1 0 1 0 0 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 2 5 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00776 Cma_Chr13 FPKM 2.245589 2.205595 2.584446 2.562899 7.02983 7.334651 7.248451 6.43226 4.4088 7.379301