Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g00777 | ATGGCAGCCACGGCTCTGGCGGCGGAGCCGCCGCAAGAGGTACTTTCCTGGCTCAAAACCCTACCTCTGGCTCCCGAATACCACCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTATCTCCATCACCGAAGAAAACTGTAATTGTCAATTTCAATAGGTCGCTTGCAGCTCGTGCCCCCTGTTCTGACACGAGCGATTCCAAATCTCCGCCTACATTCACTACTCGACAACAACAGATCGGGTTTTGCCCGCGTAAAACTCGGCCGGTTCAGAAATCAGTGTGGCAGAGCGGCGAGTACTACACATTTCAGCAATTTGAAGCTAAGGCGAAGAGCTTTGAGAAGAGCTATTTGAAGAAATGTGTGAAGAAAGGGGGGCTTTCGCCTTTAGAAATCGAGACGCTCTATTGGAGAGCCACTTTGGACAAGCCGTTTTCAGTGGAATATGCGAACGACATGCCTGGTTCAGCTTTTGTGCCGGTAAATGCAAAAATGCTTCGGGAGGCAGGGGAAGGAACAACGCTTGGGGAGACGGCATGGAACATGAGGGGGGTGTCTAGGGCGAAGGGGTCTCTATTGAAGTTTATGAAGGAGGAGATTCCAGGAGTTACTTCGCCAATGGTGTACGTAGCTATGATGTTCAGCTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGCTTAAATTATCTGCATATGGGGGCGGGAAAGACATGGTATGGCGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATCAATCCCCTTGTCACTTTTGCTGTTCTTGGTGAGAAGATCACTGTAATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGTGAATTTGTTGTCACTTTTCCTCGGGCTTATCATACAGGGTTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGGTAAGGCTTGCTAAAGATGCTGCAATTCGTAGAGCTTCGATCAATTATCCTCCGATGGTCTCTCATTTTCAGTTGCTATACGATCTTGCTTTAAGTTCCAGATCACCTCTGTGCACGGGTGCTGAACCAAGAAGTTCACGACTAAAAAATAAAAGAAAGAGTGAAGGGGAAGCAGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGACATTCTTGGAAGAGGAGCGTCGGTTGTACTTCTTCCCCCAGGTTCTTCAGATTCTATTTATTCGAGACAGCGCATTGGATCCCACCCGAGAGCAAAATCTAGATTTCCTGTTGGTTTTTGCAGTTCTAAGGAAGAAACCAAATCTTCTCAAAGTTTTGATTATGATAATCTCACACTAGAAAATAGCCAGGGAATGAATCAAGTTAAAGGTTTCTATTCAGCTAACAGGCTGTATTCTACTCTCTCTGAAAGAAACATGGAGAATTTATGTGATTCAAGGTCGAAGACTTCGAATGGCAGCAACGAACGAGGTGGTAATGTTCTTAGTGATGGATTAACAGATCAAAGGCTGTTTTCTTGTGTCACATGTGGCATTTTAAGCTTTGCCTGTGTAGCCATCGTCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGCTGTTGGTTCTGGGATAGCTATTAGAGATGGGCATGCAGTTAGCTCTCAGCAGATTAGTAATAGTGGAAAAAGAGATACGTGCGTTTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTCCAATTGCAGATGAAAGTTACAAAGCTAATCTAAGTACTGAAAAACGGAATGAGACTTCTGCCCTTGGCATGCTCGCATTGGCATATGGACATTCTTCCGATTCTGAGGAGGACAATGCTGAAGCAGATGCTGCGTTAAATCCCGGCGATGCTAAACTAACGGTTTGTTCTTCAGGAAACCAATATCAGTATGACAATTCTGGTCTTACTTCTAGTGAAAATTGCAAAAATACTGCAACTTTGGATCACAATGCCTCGTCATTTGGCGTTAACACTACAGATCAAATGCACTTCCAAATCAATGACTATGAAGAATTTGGACAAGCTAGATGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACTAAGAAAAATGGCTTGTCGCCTAGATATCAAGATTTGCATGTGAACGACAGATCTTCCTTAGACGCTGATACTGAAAAACCAACGTTTGACGAATCCACGGAACCGGTGGAGATTGAGAATATGCCATTTGCTCCAGATATTGATGAAGACTCCTCTAGGTTGCATGTATTCTGCCTAGAGCACGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGCGCACATTCTTTTACTCTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAAGTGGTGGCACAAGAATTAAGTATGGACCATGTGTGGACCGATACGACGTTCAGAGGTGCCACCGAAGATGAAGAAAGGAGAATTCAGTTAGCTTTAGATAGTGAGGAAGCGATTCCAGGTCATGGAGATTGGGCTGTAAAGTTGGGAATAAATCTGTTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAATTCTGTTATTTATAATGCATTTGGCCGTAGTGCTACTCCCAACGCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGGACTGCTGGAAAGTTGAAACGATTAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCGAATCAAGTTCATCCTTTGCTAGCAAAGCGAGATCCTCAACAAGAAGATGTAGACGTCTTCCATTCTTGGACAATGCCGGATGAGAAGTTTGACAGGAAATCGGAAAATGTCCGTAAAAATGAGACTGTTATGGTGAATAGAAAATCTGCTGGCAAGAGAAAAATGACTCGTGGGAGTGGAACAGCTAAAAAGGCGAAACCCCGAGAGTCAGAGGACATGGTTTCAGATGATTCAGTCGAAGATTGTGTCGATCAGCATCATAATATTCATCGGAACAAGCGATACAAATTTGTTGAGATCAATGATGCTATGTCAGATGATTCTGTTGAGGATGATTCTTGTGGAAAACATGGAGGAGTTTCCATTAGCAAGGGAGTGACATATTGTCGAACCTATGACACCGGTTCAGAGGACTCTCTCGGAGATCGTCGTAATCAGCAGCACAGAGGGTTCTCTGGATTCAAGCTGCCGAAATGGGGTGAGATAGAACCCGCAGTTTCTGATGATTCCTTAGAGCACGATTCTTCTCGGCATCGTGAGCAACATATAAGGATTCCAAGAAGCAAGCAAACCAATGTTCTTAAAAAGAATGTCGTTTCACATGATATACGGGACGATAGTTTTCTTTGGCATCATCAAAGGACTTCCAGAAGCAAGAAGGCGAAATCAATCGAGAGTGAAGATGTCGTTTCAGAGGACTCTGTTGAAAATGATTCTCATCAGCATAGAAGTAGGCCTCAAAGGAAACCAGCCAAATCCACCGCGAGGGAAGACGTATTCTCAGATGATCCAGACGAAGATGATAATTCTCTTCTGCAGCATAGAAGAAACATGCAATTCAATACATCAGATAACCAACTTGATGATAGTGTTGATCAATACAGGAGGAGAGTACTCCGAAGTAAGCCAGTCAAGGCCGAGACAATTTCTCAAATGAAACAAGAGATCCTGCGATCTGCGAAGCGAGGAGCCTCGCAGACTTTGAAAGAAGAATTTGCTCAATCCTTAAAATGTGGAGGCCGCCATACCTCAAACTTAGAGACCCCTCAGCCAAGAATACAACATGCCGCTAATCGGCACGGTAAGCAAGCTAAGAGGAATAGTAAATCGACCGATTTGGAATCAGAAAACGAGCAACCAGGTGGACCTAGCACACGTCTTCGAAAAAGAACTCTAAAGCCTACTAAACTTACAGAAGCGAAACTGAAAGATAAAAAACCAATTAGCAAGAAAAAGGTGAAGAATAGTTCATCTTTGAAGACTCCAGCAGGCCGTAGAGATTCAAAAGCAGCAGGGGATGAGGAATCAGAATATCTTTGCGACATCGAGGGTTGCAATATGAGTTTCGGTTCAAAACAAGAACTTGTTGTGCACAAACGAAATGTTTGTCCTGTCAAAGGGTGTGGGAAGAAGTTCTTCTCACACAAGTACCTCGTGCAGCATCGTCGAGTCCACATGGACGACCGTCCCCTTAAATGTCCATGGAAGGGCTGCAAGATGACGTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTACGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTCGTTTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGCTAGGGTTTCTGGGTGTTCAAATGTGAGCATAATGGAACCTTCTGAAGCCGTTTCAGTCCCCAATCACTGTGAAGTATCGGCTTCTGAGTTTCAATCTTCTTCGCAGTTTCGTAGTTCTGTTCTTGATCCTGTGGCTACAGATGATCGCATCCATGCAGAGCTTCAGGAATTGGATTTGAAGGATGAGAAAGAGGAGACCGTGAAGGATTTTGATGACGGTGGAGAATGGGAAGTTGAGAAGAATCCCGATGAAGGTGAAGGAAATGATGCGAAGAAGATCGGTGAGAGTGATCGAGATAGAAGCGTTAGGAATGACGACGGCGATGACGATAACGATGAGGAGGTTCATGCAGCCGACGGCGACGGCGGTGAGGTGGAGAATAAAGGGGATTGGAGAGGCAAAAACAACCAGTATCCAGTACGACCGGAGGCGGAGGATTGTGCCTTTTACCTCAAGACTGGGACCTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAAAACCAGGTTGTTTCTGAGAAATTAAAGTACGAAGACGATTCAGCTAGGCTGGCGGGCAAGACGGAATGCAAGTTTTATATGAGGACGGGGGGTTGTAAATTCGGGGACGCTTGTAGATATAACCACACGAGACCAAAAGCGTTGGCAAGCTCAATTCTAGAGCTTAACTTCCTTGGTCTGCCAATCCGACCAGATGAAAAAGAATGTCCCTTTTACATGCGCACCGGGTCCTGCAAATACGGAGCTAACTGCAAGTTTAACCATCCTGATCCCACAACTGTTGTTGTACCCGAATCTCCGTCAGGATATAACAATGGAGTGCCCCTACAAGGTGGATCACAATCACATATCCCATCCTGGAATTCACCAAGAGTACTGAATGAAGCTACAGCATTTGTACCTGCTGTGATCCCACCATCTCCAGATTCAGAATGGAACGGTTACCAGGCTCCCGTATATCCATCAGAAATCAGCGTGCTTCCACCTCCGACATACGTCGTGATCAATATAGCATCTGAGACAGATATCTATCCTTCTCATCAGCAGGCGGAAGAGTATCCCGAACGACCTGGTCAACCTGATTGCAGCTACTTTCTAAAGACGGGGGACTGTAAATTTAAAACTCTTTGCAAATATCACCATCCAAAGAATCGGAACCCGAAGTTACCGGCTTGCACTCTCAATGATAAAGGCCTGCCTTTGAGACCTGATCAGAACATATGCACATATTATAGTCGTTACGGCATCTGCAAGTTCGGGCCATCTTGCAAGTTCGACCATCCTATGCTTCCAGCTTCCTCAACCGTGGGCGTGGGCGATCTTGAGCAGCAACCTCGCTACGGTAACTTTAGTGCTGCAGAAGGGGCTGAAATGGCTGGGGGAGGGAGCAGAAACAGCCCCACAGGCATGGCATATTCGGAACCTGCTAATGCTGAACGAGAGGTGATTCAAGTTAACAATGCTCAGAGGAAACCCAGGATTTTACTTGCTGCCAGTGGAAGTGTAGCTTCGATTAAGTTTGGGAATCTCTACCATTCTTTCTCCGAATGGGCAGACGTAAGAGCGGTGGCTACTAAGGCCTCTTTACACTTCATCGATCGAGCATCTCTTCCTAAGGATTACATACTTTACACCGATGAGGATGAGTGGAATGGTTGGAACAAAATTGGAGATAGTGTTCTTCATATTGAGCTTCGCCGCTGGGCTGATATCATGGTTATTGCCCCTCTGTCTGCAAACACGCTCGGCAAGATTGCAGGCGGATTATGTGACAATCTATTGACTTGTGTCGTGCGAGCATGGGACTATAACAAGCCACTCTTTGTTGCGCCTGCCATGAATACCTTTATGTGGACCAACCCTTTCACCGAGCGACATCTCATTGCAATTGATGAGCTTGGAATAACTCTCATCCCACCTGTTACCAAGAGGCTAGCCTGTGGGGACTACGGCAATGGTGCAATGGCTGAACCTTCCTTAATCTTCTCAACCGTGAGACTCTTCTACGAGTCACGAATGCAACAAAGTGCCAAAAATGGTGAGTGTTGTTAA | 6588 | 45.32 | MAATALAAEPPQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVSPSPKKTVIVNFNRSLAARAPCSDTSDSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKSFEKSYLKKCVKKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVNAKMLREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKITVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFNCGEAANIATPEWVRLAKDAAIRRASINYPPMVSHFQLLYDLALSSRSPLCTGAEPRSSRLKNKRKSEGEAVIKELFVQNIVENNSLLDILGRGASVVLLPPGSSDSIYSRQRIGSHPRAKSRFPVGFCSSKEETKSSQSFDYDNLTLENSQGMNQVKGFYSANRLYSTLSERNMENLCDSRSKTSNGSNERGGNVLSDGLTDQRLFSCVTCGILSFACVAIVQPREQAARYLMSADCSFFNDWAVGSGIAIRDGHAVSSQQISNSGKRDTCVSDGLYDVPVQAVNRQLPIADESYKANLSTEKRNETSALGMLALAYGHSSDSEEDNAEADAALNPGDAKLTVCSSGNQYQYDNSGLTSSENCKNTATLDHNASSFGVNTTDQMHFQINDYEEFGQARCSSESEMDGIGSTKKNGLSPRYQDLHVNDRSSLDADTEKPTFDESTEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGAHILLLCHPDYPKMEAEAKVVAQELSMDHVWTDTTFRGATEDEERRIQLALDSEEAIPGHGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSATPNASGKPKVYQRRTAGKLKRLVAGKWCGKVWMSNQVHPLLAKRDPQQEDVDVFHSWTMPDEKFDRKSENVRKNETVMVNRKSAGKRKMTRGSGTAKKAKPRESEDMVSDDSVEDCVDQHHNIHRNKRYKFVEINDAMSDDSVEDDSCGKHGGVSISKGVTYCRTYDTGSEDSLGDRRNQQHRGFSGFKLPKWGEIEPAVSDDSLEHDSSRHREQHIRIPRSKQTNVLKKNVVSHDIRDDSFLWHHQRTSRSKKAKSIESEDVVSEDSVENDSHQHRSRPQRKPAKSTAREDVFSDDPDEDDNSLLQHRRNMQFNTSDNQLDDSVDQYRRRVLRSKPVKAETISQMKQEILRSAKRGASQTLKEEFAQSLKCGGRHTSNLETPQPRIQHAANRHGKQAKRNSKSTDLESENEQPGGPSTRLRKRTLKPTKLTEAKLKDKKPISKKKVKNSSSLKTPAGRRDSKAAGDEESEYLCDIEGCNMSFGSKQELVVHKRNVCPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKARVSGCSNVSIMEPSEAVSVPNHCEVSASEFQSSSQFRSSVLDPVATDDRIHAELQELDLKDEKEETVKDFDDGGEWEVEKNPDEGEGNDAKKIGESDRDRSVRNDDGDDDNDEEVHAADGDGGEVENKGDWRGKNNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVSEKLKYEDDSARLAGKTECKFYMRTGGCKFGDACRYNHTRPKALASSILELNFLGLPIRPDEKECPFYMRTGSCKYGANCKFNHPDPTTVVVPESPSGYNNGVPLQGGSQSHIPSWNSPRVLNEATAFVPAVIPPSPDSEWNGYQAPVYPSEISVLPPPTYVVINIASETDIYPSHQQAEEYPERPGQPDCSYFLKTGDCKFKTLCKYHHPKNRNPKLPACTLNDKGLPLRPDQNICTYYSRYGICKFGPSCKFDHPMLPASSTVGVGDLEQQPRYGNFSAAEGAEMAGGGSRNSPTGMAYSEPANAEREVIQVNNAQRKPRILLAASGSVASIKFGNLYHSFSEWADVRAVATKASLHFIDRASLPKDYILYTDEDEWNGWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCVVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGDYGNGAMAEPSLIFSTVRLFYESRMQQSAKNGECC | 2195 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6687078 | 6702758 | + | CmaCh13G007770.1 | Cma13g00777 | 306604 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g00777 | 2195 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1479 | 1503 | IPR013087 | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1169 | 1226 | - | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1563 | 1645 | - | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1417 | 1446 | IPR013087 | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD | 2003 | 2180 | IPR036551 | GO:0003824 | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1092 | 1111 | - | - | |
| Cma13g00777 | 2195 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE REF6 | 4 | 1501 | - | - | |
| Cma13g00777 | 2195 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1419 | 1441 | IPR013087 | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1696 | 1724 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | SUPERFAMILY | CCCH zinc finger | 1743 | 1770 | IPR036855 | GO:0046872 | |
| Cma13g00777 | 2195 | Pfam | Flavoprotein | 2005 | 2177 | IPR003382 | GO:0003824 | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1563 | 1613 | - | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1868 | 1896 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | ProSiteProfiles | JmjC domain profile. | 198 | 360 | IPR003347 | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | JmjN domain profile. | 24 | 65 | IPR003349 | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1169 | 1215 | - | - | |
| Cma13g00777 | 2195 | Gene3D | - | 1693 | 1779 | - | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1276 | 1386 | - | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1447 | 1476 | IPR013087 | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | CCCH zinc finger | 1649 | 1678 | IPR036855 | GO:0046872 | |
| Cma13g00777 | 2195 | Gene3D | - | 1989 | 2188 | IPR036551 | GO:0003824 | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1123 | 1137 | - | - | |
| Cma13g00777 | 2195 | Gene3D | - | 1857 | 1943 | - | - | |
| Cma13g00777 | 2195 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1653 | 1675 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1917 | 1941 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1700 | 1721 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1744 | 1768 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | Pfam | RNA-binding, Nab2-type zinc finger | 1873 | 1894 | - | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | Clavaminate synthase-like | 209 | 371 | - | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | CCCH zinc finger | 1912 | 1940 | IPR036855 | GO:0046872 | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1004 | 1033 | - | - | |
| Cma13g00777 | 2195 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 4 | 1501 | - | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | CCCH zinc finger | 1700 | 1724 | IPR036855 | GO:0046872 | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1649 | 1677 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 1449 | 1471 | IPR013087 | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1284 | 1308 | - | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1348 | 1362 | - | - | |
| Cma13g00777 | 2195 | SMART | c3hfinal6 | 1697 | 1723 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | SMART | c3hfinal6 | 1649 | 1676 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | SMART | c3hfinal6 | 1914 | 1941 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | SMART | c3hfinal6 | 1744 | 1769 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | SMART | c3hfinal6 | 1868 | 1895 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | Gene3D | Classic Zinc Finger | 1415 | 1503 | - | - | |
| Cma13g00777 | 2195 | Pfam | jmjN domain | 25 | 58 | IPR003349 | - | |
| Cma13g00777 | 2195 | Gene3D | - | 1632 | 1691 | - | - | |
| Cma13g00777 | 2195 | SMART | c2h2final6 | 1394 | 1416 | IPR013087 | - | |
| Cma13g00777 | 2195 | SMART | c2h2final6 | 1447 | 1471 | IPR013087 | - | |
| Cma13g00777 | 2195 | SMART | c2h2final6 | 1417 | 1441 | IPR013087 | - | |
| Cma13g00777 | 2195 | SMART | c2h2final6 | 1477 | 1503 | IPR013087 | - | |
| Cma13g00777 | 2195 | SMART | JmjN_1 | 23 | 64 | IPR003349 | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1465 | 1499 | IPR036236 | - | |
| Cma13g00777 | 2195 | SMART | cupin_9 | 195 | 360 | IPR003347 | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 1477 | 1508 | IPR013087 | - | |
| Cma13g00777 | 2195 | Pfam | JmjC domain, hydroxylase | 228 | 345 | IPR003347 | - | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1742 | 1770 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1914 | 1942 | IPR000571 | GO:0046872 | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1018 | 1033 | - | - | |
| Cma13g00777 | 2195 | Gene3D | Cupin | 17 | 364 | - | - | |
| Cma13g00777 | 2195 | MobiDBLite | consensus disorder prediction | 1123 | 1151 | - | - | |
| Cma13g00777 | 2195 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1433 | 1475 | IPR036236 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g00777 | - | - | - | csv:101210063 | 2493.77 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma13g00777 | Cma18g00208 | CST |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01855 | Cma-Chr4:9405328 | Cma13g00777 | Cma-Chr13:6687078 | 1.26E-12 | dispersed | |
| Cma11g00051 | Cma-Chr11:256447 | Cma13g00777 | Cma-Chr13:6687078 | 6.05E-86 | dispersed | |
| Cma13g00777 | Cma-Chr13:6687078 | Cma18g00210 | Cma-Chr18:1145484 | 3.82E-135 | dispersed | |
| Cma14g01634 | Cma-Chr14:12230592 | Cma13g00777 | Cma-Chr13:6687078 | 1.87E-17 | dispersed | |
| Cma19g00217 | Cma-Chr19:1475158 | Cma13g00777 | Cma-Chr13:6687078 | 8.04E-68 | dispersed | |
| Cma20g00237 | Cma-Chr20:1145042 | Cma13g00777 | Cma-Chr13:6687078 | 4.68E-13 | dispersed | |
| Cma18g00208 | Cma-Chr18:1138585 | Cma13g00777 | Cma-Chr13:6687078 | 0 | transposed | |
| Cma10g00076 | Cma-Chr10:316764 | Cma13g00777 | Cma-Chr13:6687078 | 1.21E-82 | wgd | |
| Cma13g00777 | Cma-Chr13:6687078 | Cma18g00207 | Cma-Chr18:1129465 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g893 | Blo04g00708 | Blo16g00248 | . | . | . | Bpe13g00218 | Bma06g00242 | . | Cmo13g00808 | Cmo18g00184 | . | . | . | . | . | Cpe20g00333 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone2ag0950 | Cone16ag0051 | . | . | Lsi02g00466 | Csa01g00921 | Chy12g01205 | Cme12g01626 | . | . | Bda11g01626 | Bda14g00777 | . | Bpe15g00167 | Bma03g00756 | . | Sed08g2465 | . | . | Cma13g00777 | Cma18g00208 | Car13g00625 | Car18g00202 | Cpe09g00988 | . | Bhi08g01694 | Tan05g2898 | Cmetu12g0034 | Lac10g0537 | Hepe07g2163 | . | . | Cla03g00322 | Cam03g0338 | Cec03g0330 | Cco03g0344 | Clacu03g0340 | Cmu03g0946 | Cre03g0639 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0008005 | 0 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 36 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36117 | PF02441 | Flavoprotein | 6.40E-44 | No_clan | Cma | TF |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma13g00777 | Cma_Chr13 | FPKM | 18.693684 | 20.374357 | 20.975739 | 20.044598 | 17.50824 | 18.61072 | 17.655869 | 19.013271 | 18.233902 | 17.00683 |