Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00779 ATGAGCAGCAAGGTAGAAGCCTGTCCAGAATGCACCCAAAGATGCTTACGTTTTCATAGAAAGACAGGGAATTCATCATCTGTTACGTCGTTCTTCAAAGTTATGTTTGGGGATCGCTTTTCTGAAGTTGTGTTCTTCCCACCTATTTTTGCATCTACCGTGTCGAAGTTGGTTAATAAAAAGGTTGTTCTTGAGGATTCTCTTGGACAACAATGGAAGGTAACAGTATCCAATTGCGAAGGATCTCTTGCTTTTCAAGAAGGGTGGAGTGCTTTTTCATCAGAGCATAGCTTAGAAATTGGAGATTTTGTGATCTTCAATCACATCATGGACTTGCACTTCAATGTTAGTATCTACACTAAAACTGGTTGTGAAAAAGTATGGTTTGCTGAAAAAAGCTATACGAGGAAAAGAATTAGAAGTACTTGTCCTGTACTTGAGATAACTAATGAAGGTTTGTCAAATCCACAAGCTTCAAGCCCCTCTGTGGGTTCTGGATCCAATGTGACACTATCTCAAGATAAATTTCACGTGGCTGGTTATCGAAACATGAATGTATACCAGGGTAAAAGGCGAAAGTACCAGAGCAACGATGAATGGCATGGACCTTTAAACATTGTTGATGATTCGTATTGTTTAATCGACAGGAACAAGGATGTAGGACCGGAGGAAAACAGAAGCCCCTTATTTAACTTGTTTTCCATGGAAATGCAGATGGTCAATTCCTGCATCAATGAGAATTCCACAAATAAAGCTGCTCAGGATGAGATAAACCCGAACTGTGCTTCCTCATCGCAGAATACTATAATCAGTGTCGGCCCAGTTAACAGTGTTCCAGTAGATATAAGAGGAGACACGGAAGTATTGCCTTCAAATGTATCTGCTAACAAGATAAATGATAAAAGACAGTGTTTTGAGGAGGCTGACATAAAGATGAGTGTCTCTGGTAAAGATCCTTGCCATGACAGGACTATAGAGGTTCCTTTTATTTCATCTGCAACAAACTCCGATCAAAAGGGGGAGCCTTTTTGTGACATGCCATTAAAAATCATAAGAGACTACCAGAATGTACCAGCAATGTGCAACACAGTATCGACAATTACAAGACATGATCAGGGGTCTAGTGTGAAACAGGAGTACCCTCCAAATTCCTTGAAGGTTAAAAAATGGGACGAGAAAAAGATCATTAAAATGGAACCATTGGAAATCAAAACAGAAGTGAACAACTGCGGAGATATCACTGAACAAATATTGGAGCCAAAAGTCATTAAGGAGGAGTTCCTTGAAACGTCTAACCAAAGTGGTAGAGAAAATAATGATACCACTGATAATGCAGATCCGATTGGAACTCCAGCCCATATCTCCTGTGTAGTGGCTAAAGATACTCTATCCTTTCTGGAGCTGCCGATGACTTTTCACCTACCATGTTCAAGAGGTCGTAGAAATCCAGAGAATAAGAAGGTAGTGTTTCTGCGGGATCCCAGTAAGAGATTGTGGCCAATTCTTTACCATGAGATGCCTAATGTTCAAGTTCTAACAAGTGGGTGGGAAGCTTTTTGCTGTGCAAATAGAATCGAATCTGGGGACGAGTGTTTGTTTCATGTCAAGGACGAGCTCAAACGTGAATACAACATTAGCATTAGGAAATACGGCACAGCATATGCAAAGCAATGA 1674 40.44 MSSKVEACPECTQRCLRFHRKTGNSSSVTSFFKVMFGDRFSEVVFFPPIFASTVSKLVNKKVVLEDSLGQQWKVTVSNCEGSLAFQEGWSAFSSEHSLEIGDFVIFNHIMDLHFNVSIYTKTGCEKVWFAEKSYTRKRIRSTCPVLEITNEGLSNPQASSPSVGSGSNVTLSQDKFHVAGYRNMNVYQGKRRKYQSNDEWHGPLNIVDDSYCLIDRNKDVGPEENRSPLFNLFSMEMQMVNSCINENSTNKAAQDEINPNCASSSQNTIISVGPVNSVPVDIRGDTEVLPSNVSANKINDKRQCFEEADIKMSVSGKDPCHDRTIEVPFISSATNSDQKGEPFCDMPLKIIRDYQNVPAMCNTVSTITRHDQGSSVKQEYPPNSLKVKKWDEKKIIKMEPLEIKTEVNNCGDITEQILEPKVIKEEFLETSNQSGRENNDTTDNADPIGTPAHISCVVAKDTLSFLELPMTFHLPCSRGRRNPENKKVVFLRDPSKRLWPILYHEMPNVQVLTSGWEAFCCANRIESGDECLFHVKDELKREYNISIRKYGTAYAKQ 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6705777 6709635 + CmaCh13G007790.1 Cma13g00779 306606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00779 557 SUPERFAMILY DNA-binding pseudobarrel domain 25 124 IPR015300 -
Cma13g00779 557 SMART B3_2 31 122 IPR003340 GO:0003677
Cma13g00779 557 SMART B3_2 454 551 IPR003340 GO:0003677
Cma13g00779 557 CDD B3_DNA 462 549 IPR003340 GO:0003677
Cma13g00779 557 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 547 IPR044837 -
Cma13g00779 557 Gene3D - 24 124 IPR015300 -
Cma13g00779 557 Gene3D - 449 549 IPR015300 -
Cma13g00779 557 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Cma13g00779 557 ProSiteProfiles B3 DNA-binding domain profile. 451 551 IPR003340 GO:0003677
Cma13g00779 557 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 5 547 - -
Cma13g00779 557 CDD B3_DNA 30 119 IPR003340 GO:0003677
Cma13g00779 557 SUPERFAMILY DNA-binding pseudobarrel domain 462 539 IPR015300 -
Cma13g00779 557 Pfam B3 DNA binding domain 31 119 IPR003340 GO:0003677
Cma13g00779 557 Pfam B3 DNA binding domain 468 548 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00779 - - - cmo:103484129 759.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00779 Cma-Chr13:6705777 Cma09g00197 Cma-Chr9:818210 2.29E-10 dispersed
Cma13g00779 Cma-Chr13:6705777 Cma07g00732 Cma-Chr7:3232352 2.52E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36118 PF02362 B3 1.40E-10 CL0405 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00779 Cma_Chr13 FPKM 2.188484 2.12985 1.579849 2.058047 3.417494 3.679055 4.375952 5.744599 4.621675 5.27707