Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00781 ATGAAACGAAGCTCAATTTCCTCACTCAGCGAGTCATCTCATTTCTCAGTCGCAATGGAAGGCCAAGAGGGAACTCAGCAGCCTCATCTCGTGCTTGCTCACAAGCTTTTCCTTCTAACTCATCCTGATGTTCAAGATATCGAGAAGGTCCGTCTCACGGAGGAAGTATTGGCTTCCGTTAAAGCTGATGATATGGCTCCGTTATACGAAACCCTAACTGGAAGTTCGCTGTTGGATTTGGATCGGAGCGTGTTGGACTCGATGCGCGCTAAGAACGAGGAGGAGTTGAAGAAGCTGGACGAGAAGATTGCTGATGCAGAAGAAAACTTAGGTGAAAGTGAAGTTCGAGAAGCTCATTTGGCCAAATCACTTTTCTTCATTCGTATTGGTGATAAGGACAGAGCTCTGGAGCAACTCAAGGTAACTGAGAGCAAAACAGTTGCAGTTGGACTTAAGATGGATTTGGTTTTCCATACACTGCAGCTTGGATTTTTCTATATGGATTTCGATCTCATCTCCAAAAGTATTGACAAAGCGAAAAACTTGTTTGAAGAAGGTGGTGATTGGGAAAGAAAGAATCGTCTGAAGGTGTATGAAGGCTTGTACTGCCTGTCCACTCGAAACTTTAAGAAGGCAGCCAACTTGTTTTTGGATTCCATCTCAACTTTCACCACATATGAGCTTTTTCCTTACGACACATTCATATTTTATACTGTTCTCACAAGCATTATATCATTGGATAGAGTGTCTCTAAAGCAAAAGGTAGTTGATGCTCCCGAGATATTGACAGTGATCGGAAAAGTCCCATATCTTTCCGACTTTTTGAACTCTTTGTATGACTGTCAATATAAATCATTTTTTTCAGCCTTTGCTGGTCTGACTGAGCAAATAAAATTAGACCGTTATTTGCATCCGCACTTCAGGTATTACATGAGAGAGGTCAGAACTGTTGTTTATTCCCAGTTTTTGGAGTCCTATAAGAGTGTTACAATCGAAGCTATGGCGAAGGCATTTGGAGTATCTGTGGAATTTATTGATCTGGAGTTATCTCGCTTTATTGCCGCGGGAAAACTTCATTGCAAGATCGATAAAGTAGCAGGTGTTCTTGAAACTAATCGTCCTGATTCAAAGAATGCTCTGTACCAAGCTACCATCAAGCAAGGAGATGTCTTACTGAACCGTATCCAGAAGTTGTCTCGTGTAATTGATCTGTAA 1215 41.65 MKRSSISSLSESSHFSVAMEGQEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLTEEVLASVKADDMAPLYETLTGSSLLDLDRSVLDSMRAKNEEELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKDRALEQLKVTESKTVAVGLKMDLVFHTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCLSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKVPYLSDFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVSVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDSKNALYQATIKQGDVLLNRIQKLSRVIDL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6717877 6721679 + CmaCh13G007810.1 Cma13g00781 306608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00781 404 Coils Coil 85 116 - -
Cma13g00781 404 ProSiteProfiles PCI domain profile. 208 376 IPR000717 -
Cma13g00781 404 PANTHER BNAC08G11800D PROTEIN 21 404 - -
Cma13g00781 404 SUPERFAMILY Winged helix DNA-binding domain 300 381 IPR036390 -
Cma13g00781 404 Pfam PCI domain 271 372 IPR000717 -
Cma13g00781 404 PANTHER 26S PROTESOME SUBUNIT 6 21 404 IPR019585 -
Cma13g00781 404 Pfam 26S proteasome subunit RPN7 81 254 IPR045135 -
Cma13g00781 404 SMART PINT_4 305 388 IPR000717 -
Cma13g00781 404 Gene3D - 24 355 - -
Cma13g00781 404 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 305 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00781 K03037 PSMD6, RPN7; 26S proteasome regulatory subunit N7 - csv:101212349 724.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00781 Cma18g00216 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00781 Cma-Chr13:6717877 Cma14g02011 Cma-Chr14:14082226 3.77E-17 dispersed
Cma13g00781 Cma-Chr13:6717877 Cma18g00216 Cma-Chr18:1164929 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g912 . . . . Bpe12g00682 . . . Cmo13g00813 Cmo18g00192 . . . . . Cpe20g00329 . . . . . . . . . . . . . . . Cone2ag0954 Cone16ag0042 . . . Csa01g00932 Chy12g01195 Cme12g01618 Blo13g00159 . . . . . . Bma08g00127 Sed02g1603 . . Cma13g00781 Cma18g00216 Car13g00630 Car18g00209 Cpe09g00982 . Bhi08g01708 Tan05g2917 Cmetu12g0851 Lac10g0546 Hepe07g2154 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma13g00781 Cma_Chr13 FPKM 41.40773 41.523262 43.353401 44.223694 49.015686 48.419518 51.463669 42.702911 40.042145 44.818775